West Indian T2T · gene

Pa06g2152

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,791
bp
Pa06:50,451,394–50,453,184
genomic location
Record overview

Feature identity

Identifier
Pa06g2152
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
1,791 bp
Genomic location
Pa06:50,451,394–50,453,184
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC104611347 | Seed ortholog: 337451.A0A3S3NIQ9 | COG: COG1716 | eggNOG OG: ABC2_membrane@131567|O-4, ABC2_membrane@2759|BwZ-22, ABC2_membrane@3193|FfM-27, ABC2_membrane@3398|GZQ-28, ABC2_membrane@35493|Dzg-25, ABC2_membrane_7@131567|C-2, ABC2_membrane_7@2759|Lq-14, ABC2_membrane_7@3193|aI-18, ABC2_membrane_7@3398|fG-19, ABC2_membrane_7@35493|Sx-16, ABC_tran|3E97J9@2759, ABC_tran|3E97J9@3398, ABC_tran|3E97J9@58023
Gene Ontology
GO:0002040 sprouting angiogenesis; GO:0005515 protein binding; GO:0005524 ATP binding; GO:0005543 phospholipid binding; GO:0005739 mitochondrion; GO:0006355 regulation of DNA-templated transcription; GO:0006641 triglyceride metabolic process; GO:0008203 cholesterol metabolic process; GO:0009414 response to water deprivation; GO:0010115 regulation of abscisic acid biosynthetic process; GO:0010148 transpiration; GO:0010745 negative regulation of macrophage derived foam cell differentiation; GO:0010874 regulation of cholesterol efflux; GO:0010875 positive regulation of cholesterol efflux; GO:0010887 negative regulation of cholesterol storage; GO:0010888 negative regulation of lipid storage; GO:0015485 cholesterol binding; GO:0015886 heme transport; GO:0015918 sterol transport; GO:0016887 ATP hydrolysis activity; GO:0019534 toxin transmembrane transporter activity; GO:0020037 heme binding; GO:0030301 cholesterol transport; GO:0031152 aggregation involved in sorocarp development; GO:0031288 sorocarp morphogenesis; GO:0032367 intracellular cholesterol transport; GO:0033344 cholesterol efflux; GO:0033700 phospholipid efflux; GO:0033993 response to lipid; GO:0034041 ABC-type sterol transporter activity; GO:0034374 low-density lipoprotein particle remodeling; GO:0034375 high-density lipoprotein particle remodeling; GO:0034436 glycoprotein transport; GO:0035774 positive regulation of insulin secretion involved in cellular response to glucose stimulus; GO:0042048 olfactory behavior; GO:0042626 ATPase-coupled transmembrane transporter activity; GO:0042632 cholesterol homeostasis; GO:0042802 identical protein binding; GO:0042803 protein homodimerization activity; GO:0042908 xenobiotic transport; GO:0042987 amyloid precursor protein catabolic process; GO:0043531 ADP binding; GO:0043691 reverse cholesterol transport; GO:0045542 positive regulation of cholesterol biosynthetic process; GO:0046982 protein heterodimerization activity; GO:0048870 cell motility; GO:0050714 positive regulation of protein secretion; GO:0055085 transmembrane transport; GO:0055091 phospholipid homeostasis; GO:0071403 cellular response to high density lipoprotein particle stimulus; GO:0090181 regulation of cholesterol metabolic process; GO:0090554 phosphatidylcholine floppase activity; GO:0120020 cholesterol transfer activity; GO:0140328 floppase activity; GO:1902004 positive regulation of amyloid-beta formation; GO:1904411 positive regulation of secretory granule organization; GO:1990830 cellular response to leukemia inhibitory factor; GO:1990961 xenobiotic detoxification by transmembrane export across the plasma membrane
KEGG
KO: K05681 | Pathway: 02010 | BRITE: 00001, 02000, 04090, 04147
Biological context

Connected feature records

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