Feature identity
- Identifier
- PaHa06g04650.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 834 bp
- Genomic location
- 6:6,542,785–6,554,546
- Strand
- +
Hass · mRNA
PaHa06g04650.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 834
- bp
- 6:6,542,785–6,554,546
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa06g04650
- eggNOG
- Preferred name: ASG4 | Seed ortholog: 337451.A0A443PFC2 | COG: S | eggNOG OG: Myb_DNA-binding@131567|uI-23, Myb_DNA-binding@2759|yY-24, Myb_DNA-binding@33090|INd-41, Myb_DNA-binding@3398|PWh-47
- Gene Ontology
- GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0007623 circadian rhythm; GO:0009637 response to blue light; GO:0010099 regulation of photomorphogenesis; GO:0010114 response to red light; GO:0032922 circadian regulation of gene expression; GO:0042752 regulation of circadian rhythm; GO:0043153 entrainment of circadian clock by photoperiod; GO:2000024 regulation of leaf development; GO:2000028 regulation of photoperiodism, flowering
- KEGG
- EC: ec:3.4.21.102 | KO: K03797, K11314, K12133, K12134, K15127 | Pathway: 04712 | BRITE: 00001, 01000, 01002, 03000, 03021, 03036
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa06g04650.1-protein
derives_frommRNAPaHa06g04650.1
mRNAPaHa06g04650.1
part_ofgenePaHa06g04650
CDS
part_ofPaHa06g04650.1-CDS-6-1787993825:6542785..6542942mRNAPaHa06g04650.1
CDS
part_ofPaHa06g04650.1-CDS-6-1787993825:6545656..6545713mRNAPaHa06g04650.1
CDS
part_ofPaHa06g04650.1-CDS-6-1787993825:6547190..6547313mRNAPaHa06g04650.1
CDS
part_ofPaHa06g04650.1-CDS-6-1787993825:6547400..6547576mRNAPaHa06g04650.1
CDS
part_ofPaHa06g04650.1-CDS-6-1787993825:6550843..6550955mRNAPaHa06g04650.1
CDS
part_ofPaHa06g04650.1-CDS-6-1787993825:6552317..6552376mRNAPaHa06g04650.1
CDS
part_ofPaHa06g04650.1-CDS-6-1787993825:6554310..6554410mRNAPaHa06g04650.1
CDS
part_ofPaHa06g04650.1-CDS-6-1787993825:6554504..6554546mRNAPaHa06g04650.1
exon
part_ofPaHa06g04650.1-exon-6-1787993825:6542785..6542942mRNAPaHa06g04650.1
exon
part_ofPaHa06g04650.1-exon-6-1787993825:6545656..6545713mRNAPaHa06g04650.1
exon
part_ofPaHa06g04650.1-exon-6-1787993825:6547190..6547313mRNAPaHa06g04650.1
exon
part_ofPaHa06g04650.1-exon-6-1787993825:6547400..6547576mRNAPaHa06g04650.1
exon
part_ofPaHa06g04650.1-exon-6-1787993825:6550843..6550955mRNAPaHa06g04650.1
exon
part_ofPaHa06g04650.1-exon-6-1787993825:6552317..6552376mRNAPaHa06g04650.1
exon
part_ofPaHa06g04650.1-exon-6-1787993825:6554310..6554410mRNAPaHa06g04650.1
exon
part_ofPaHa06g04650.1-exon-6-1787993825:6554504..6554546mRNAPaHa06g04650.1
