West Indian T2T · gene

Pa10g1579

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

5,704
bp
Pa10:40,143,207–40,148,910
genomic location
Record overview

Feature identity

Identifier
Pa10g1579
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
5,704 bp
Genomic location
Pa10:40,143,207–40,148,910
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: ABCG21 | Seed ortholog: 337451.A0A443PT74 | COG: COG1716 | eggNOG OG: ABC2_membrane@131567|O-4, ABC2_membrane@2759|AfM-19, ABC2_membrane@33090|Idp-30, ABC2_membrane@3398|Jjy-31, ABC2_membrane_7@131567|C-2, ABC2_membrane_7@2759|Iz-13, ABC2_membrane_7@3193|sc-21, ABC2_membrane_7@3398|AkF-25, ABC_tran|BE9WZE@2759, ABC_tran|BE9WZE@3398, ABC_tran|BE9WZE@35493
Gene Ontology
GO:0000082 G1/S transition of mitotic cell cycle; GO:0000266 mitochondrial fission; GO:0001525 angiogenesis; GO:0001570 vasculogenesis; GO:0001666 response to hypoxia; GO:0001708 cell fate specification; GO:0001894 tissue homeostasis; GO:0002248 connective tissue replacement involved in inflammatory response wound healing; GO:0003007 heart morphogenesis; GO:0003231 cardiac ventricle development; GO:0003248 heart capillary growth; GO:0005319 lipid carrier activity; GO:0005515 protein binding; GO:0005524 ATP binding; GO:0005886 plasma membrane; GO:0006473 protein acetylation; GO:0006778 porphyrin-containing compound metabolic process; GO:0006783 heme biosynthetic process; GO:0006869 lipid transport; GO:0006954 inflammatory response; GO:0006979 response to oxidative stress; GO:0007005 mitochondrion organization; GO:0007173 epidermal growth factor receptor signaling pathway; GO:0007283 spermatogenesis; GO:0007507 heart development; GO:0007613 memory; GO:0007623 circadian rhythm; GO:0008092 cytoskeletal protein binding; GO:0008283 cell population proliferation; GO:0008340 determination of adult lifespan; GO:0008356 asymmetric cell division; GO:0008559 ABC-type xenobiotic transporter activity; GO:0008585 female gonad development; GO:0009404 toxin metabolic process; GO:0009410 response to xenobiotic stimulus; GO:0009416 response to light stimulus; GO:0009611 response to wounding; GO:0009636 response to toxic substance; GO:0010039 response to iron ion; GO:0010467 gene expression; GO:0010498 proteasomal protein catabolic process; GO:0015143 urate transmembrane transporter activity; GO:0015225 biotin transmembrane transporter activity; GO:0015419 ABC-type sulfate transporter activity; GO:0015562 efflux transmembrane transporter activity; GO:0015747 urate transport; GO:0015858 nucleoside transport; GO:0015878 biotin transport; GO:0015886 heme transport; GO:0019725 cellular homeostasis; GO:0020037 heme binding; GO:0022008 neurogenesis; GO:0022857 transmembrane transporter activity; GO:0030148 sphingolipid biosynthetic process; GO:0030225 macrophage differentiation; GO:0031152 aggregation involved in sorocarp development; GO:0031288 sorocarp morphogenesis; GO:0032217 riboflavin transmembrane transporter activity; GO:0032218 riboflavin transport; GO:0032496 response to lipopolysaccharide; GO:0032868 response to insulin; GO:0032964 collagen biosynthetic process; GO:0033013 tetrapyrrole metabolic process; GO:0034275 kynurenic acid metabolic process; GO:0034418 urate biosynthetic process; GO:0034440 lipid oxidation; GO:0034635 glutathione transport; GO:0035050 embryonic heart tube development; GO:0035148 tube formation; GO:0035194 regulatory ncRNA-mediated post-transcriptional gene silencing; GO:0036293 response to decreased oxygen levels; GO:0036446 myofibroblast differentiation; GO:0042060 wound healing; GO:0042626 ATPase-coupled transmembrane transporter activity; GO:0042752 regulation of circadian rhythm; GO:0042802 identical protein binding; GO:0042803 protein homodimerization activity; GO:0042908 xenobiotic transport; GO:0042910 xenobiotic transmembrane transporter activity; GO:0043542 endothelial cell migration; GO:0046415 urate metabolic process; GO:0048771 tissue remodeling; GO:0048870 cell motility; GO:0050890 cognition; GO:0051593 response to folic acid; GO:0055007 cardiac muscle cell differentiation; GO:0055085 transmembrane transport; GO:0060070 canonical Wnt signaling pathway; GO:0060136 embryonic process involved in female pregnancy; GO:0060218 hematopoietic stem cell differentiation; GO:0060912 cardiac cell fate specification; GO:0061026 cardiac muscle tissue regeneration; GO:0065003 protein-containing complex assembly; GO:0070384 Harderian gland development; GO:0070633 transepithelial transport; GO:0071392 cellular response to estradiol stimulus; GO:0071549 cellular response to dexamethasone stimulus; GO:0071559 response to transforming growth factor beta; GO:0072497 mesenchymal stem cell differentiation; GO:0072577 endothelial cell apoptotic process; GO:0090556 phosphatidylserine floppase activity; GO:0097168 mesenchymal stem cell proliferation; GO:0097305 response to alcohol; GO:0097709 connective tissue replacement; GO:0097719 neural tissue regeneration; GO:0097744 renal urate salt excretion; GO:0110039 positive regulation of nematode male tail tip morphogenesis; GO:0140115 export across plasma membrane; GO:0150104 transport across blood-brain barrier; GO:0160244 sulfite export across plasma membrane; GO:1901562 response to paraquat; GO:1902358 sulfate transmembrane transport; GO:1903409 reactive oxygen species biosynthetic process; GO:1904238 pericyte cell differentiation; GO:1904479 negative regulation of intestinal absorption; GO:1904612 response to 2,3,7,8-tetrachlorodibenzodioxine; GO:1904975 response to bleomycin; GO:1990646 cellular response to prolactin; GO:1990748 cellular detoxification; GO:1990961 xenobiotic detoxification by transmembrane export across the plasma membrane; GO:1990962 xenobiotic transport across blood-brain barrier
KEGG
KO: K05681 | Pathway: 02010 | BRITE: 00001, 02000, 04090, 04147
Biological context

Connected feature records

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