West Indian T2T · gene

Pa11g0389

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

576
bp
Pa11:8,036,927–8,037,502
genomic location
Record overview

Feature identity

Identifier
Pa11g0389
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
576 bp
Genomic location
Pa11:8,036,927–8,037,502
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: SLD2 | Seed ortholog: 337451.A0A3S3R9L1 | COG: COG3239 | eggNOG OG: Cyt-b5@131567|Co-10, FA_desaturase@131567|Ca-10, FA_desaturase@1437183|Gci-32
Gene Ontology
GO:0000248 C-5 sterol desaturase activity; GO:0001820 serotonin secretion; GO:0001889 liver development; GO:0002538 arachidonate metabolite production involved in inflammatory response; GO:0004768 stearoyl-CoA 9-desaturase activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005783 endoplasmic reticulum; GO:0005789 endoplasmic reticulum membrane; GO:0005886 plasma membrane; GO:0006355 regulation of DNA-templated transcription; GO:0006629 lipid metabolic process; GO:0006633 fatty acid biosynthetic process; GO:0006636 unsaturated fatty acid biosynthetic process; GO:0006665 sphingolipid metabolic process; GO:0006679 glucosylceramide biosynthetic process; GO:0006936 muscle contraction; GO:0007009 plasma membrane organization; GO:0007267 cell-cell signaling; GO:0007584 response to nutrient; GO:0008104 intracellular protein localization; GO:0008654 phospholipid biosynthetic process; GO:0009267 cellular response to starvation; GO:0009725 response to hormone; GO:0009744 response to sucrose; GO:0010467 gene expression; GO:0014055 acetylcholine secretion, neurotransmission; GO:0016020 membrane; GO:0016213 acyl-CoA 6-desaturase activity; GO:0016215 acyl-CoA desaturase activity; GO:0016491 oxidoreductase activity; GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; GO:0018991 egg-laying behavior; GO:0019369 arachidonate metabolic process; GO:0030148 sphingolipid biosynthetic process; GO:0030421 defecation; GO:0032456 endocytic recycling; GO:0033189 response to vitamin A; GO:0035264 multicellular organism growth; GO:0035900 response to isolation stress; GO:0036109 alpha-linolenic acid metabolic process; GO:0040002 collagen and cuticulin-based cuticle development; GO:0040011 locomotion; GO:0042759 long-chain fatty acid biosynthetic process; GO:0042761 very long-chain fatty acid biosynthetic process; GO:0043050 nematode pharyngeal pumping; GO:0043231 intracellular membrane-bounded organelle; GO:0043651 linoleic acid metabolic process; GO:0045088 regulation of innate immune response; GO:0045485 omega-6 fatty acid desaturase activity; GO:0045595 regulation of cell differentiation; GO:0046456 icosanoid biosynthetic process; GO:0052631 sphingolipid 8-(E/Z)-desaturase activity; GO:0062076 acyl-CoA (8-3)-desaturase activity; GO:0070417 cellular response to cold; GO:1900409 positive regulation of cellular response to oxidative stress; GO:1901557 response to fenofibrate
KEGG
EC: ec:1.14.19.38, ec:1.14.19.47 | KO: K21737 | Pathway: 00592, 01040, 01100, 01110, 01212, 03320 | BRITE: 00001, 01000
Biological context

Connected feature records

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