West Indian T2T · gene

Pa11g0596

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

8,409
bp
Pa11:14,391,778–14,400,186
genomic location
Record overview

Feature identity

Identifier
Pa11g0596
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
8,409 bp
Genomic location
Pa11:14,391,778–14,400,186
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC104597068 | Seed ortholog: 337451.A0A3S3N4B1 | COG: S | eggNOG OG: Skp1_POZ@131567|B-2
Gene Ontology
GO:0000113 nucleotide-excision repair factor 4 complex; GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0001222 transcription corepressor binding; GO:0003674 molecular_function; GO:0003682 chromatin binding; GO:0003711 transcription elongation factor activity; GO:0004842 ubiquitin-protein transferase activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006289 nucleotide-excision repair; GO:0006354 DNA-templated transcription elongation; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006367 transcription initiation at RNA polymerase II promoter; GO:0006368 transcription elongation by RNA polymerase II; GO:0006511 ubiquitin-dependent protein catabolic process; GO:0007474 imaginal disc-derived wing vein specification; GO:0008150 biological_process; GO:0008595 anterior/posterior axis specification, embryo; GO:0009411 response to UV; GO:0016032 viral process; GO:0016567 protein ubiquitination; GO:0019904 protein domain specific binding; GO:0030238 male sex determination; GO:0030674 protein-macromolecule adaptor activity; GO:0030891 VCB complex; GO:0031462 Cul2-RING ubiquitin ligase complex; GO:0031463 Cul3-RING ubiquitin ligase complex; GO:0031466 Cul5-RING ubiquitin ligase complex; GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process; GO:0032784 regulation of DNA-templated transcription elongation; GO:0032968 positive regulation of transcription elongation by RNA polymerase II; GO:0034644 cellular response to UV; GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process; GO:0044877 protein-containing complex binding; GO:0046426 negative regulation of receptor signaling pathway via JAK-STAT; GO:0051759 sister chromosome movement towards spindle pole involved in meiotic sister chromatid segregation; GO:0070449 elongin complex; GO:0070911 global genome nucleotide-excision repair; GO:0140627 ubiquitin-dependent protein catabolic process via the C-end degron rule pathway; GO:0140958 target-directed miRNA degradation; GO:1902104 positive regulation of metaphase/anaphase transition of meiotic cell cycle; GO:1990116 ribosome-associated ubiquitin-dependent protein catabolic process; GO:2000104 negative regulation of DNA-templated DNA replication
KEGG
KO: K03872 | Pathway: 04120 | BRITE: 00001, 03400, 04121
Biological context

Connected feature records

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