PaHa01g19630.1

Hass · mRNA

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,297: bp
1:34,687,834–34,710,477: genomic location

Record overview

Feature identity

Identifier: PaHa01g19630.1
Feature type: mRNA
Genome collection: Hass
Organism: Persea americana-Hass
Sequence length: 3,297 bp
Genomic location: 1:34,687,834–34,710,477
Strand: +

Open original Tripal record

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: PaHa01g19630

eggNOG: Preferred name: CMTA4 | Seed ortholog: 337451.A0A3S3MAL7 | COG: S | eggNOG OG: Ank_2@131567|Mm-10, Ank_2@2759|BXW-16, Ank_2@3193|Xgb-28, CG-1@2759|A-1, CG-1@3193|Aj-9, CG-1@35493|P-5, IQ@131567|aD-16, IQ@35493|Alg-22
Gene Ontology: GO:0000976 transcription cis-regulatory region binding; GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding; GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0000987 cis-regulatory region sequence-specific DNA binding; GO:0001223 transcription coactivator binding; GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific; GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003682 chromatin binding; GO:0003690 double-stranded DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0003712 transcription coregulator activity; GO:0003713 transcription coactivator activity; GO:0003714 transcription corepressor activity; GO:0005515 protein binding; GO:0005516 calmodulin binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0030547 signaling receptor inhibitor activity; GO:0030674 protein-macromolecule adaptor activity; GO:0031072 heat shock protein binding; GO:0042802 identical protein binding; GO:0042803 protein homodimerization activity; GO:0042805 actinin binding; GO:0042826 histone deacetylase binding; GO:0043565 sequence-specific DNA binding; GO:0044877 protein-containing complex binding; GO:0051059 NF-kappaB binding; GO:0061630 ubiquitin protein ligase activity; GO:0106222 lncRNA binding; GO:0140297 DNA-binding transcription factor binding; GO:0140311 protein sequestering activity; GO:1901149 salicylic acid binding; GO:1990837 sequence-specific double-stranded DNA binding
KEGG: KO: K21596 | Pathway: 01523, 03440, 04010, 04014, 04024, 04062, 04064, 04066, 04071, 04075, 04151, 04210, 04211, 04218, 04380, 04613, 04620, 04621, 04622, 04623, 04624, 04625, 04657, 04658, 04659, 04660, 04662, 04668, 04722, 04820, 04917, 04920, 04926, 04931, 04932, 04933, 04936, 05010, 05022, 05030, 05132, 05133, 05134, 05135, 05140, 05142, 05145, 05146, 05152, 05160, 05161, 05162, 05163, 05164, 05165, 05166, 05167, 05168, 05169, 05170, 05171, 05200, 05202, 05203, 05206, 05207, 05208, 05212, 05215, 05220, 05221, 05222, 05224, 05235, 05321, 05415, 05417, 05418 | BRITE: 00001, 03000

Biological context