West Indian T2T · gene

Pa12g1084

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,094
bp
Pa12:27,499,477–27,502,570
genomic location
Record overview

Feature identity

Identifier
Pa12g1084
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
3,094 bp
Genomic location
Pa12:27,499,477–27,502,570
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC109021023 | Seed ortholog: 337451.A0A443Q1V0 | COG: S | eggNOG OG: adh_short@131567|BMu-27!, adh_short@2759|Esd-33!, adh_short@3398|pez-45
Gene Ontology
GO:0001968 fibronectin binding; GO:0003674 molecular_function; GO:0004303 estradiol 17-beta-dehydrogenase [NAD(P)+] activity; GO:0005515 protein binding; GO:0005518 collagen binding; GO:0005575 cellular_component; GO:0005635 nuclear envelope; GO:0005739 mitochondrion; GO:0005743 mitochondrial inner membrane; GO:0005783 endoplasmic reticulum; GO:0005789 endoplasmic reticulum membrane; GO:0005829 cytosol; GO:0006633 fatty acid biosynthetic process; GO:0006694 steroid biosynthetic process; GO:0006702 androgen biosynthetic process; GO:0006703 estrogen biosynthetic process; GO:0008150 biological_process; GO:0008201 heparin binding; GO:0009635 response to herbicide; GO:0009923 fatty acid elongase complex; GO:0010038 response to metal ion; GO:0010288 response to lead ion; GO:0010811 positive regulation of cell-substrate adhesion; GO:0010884 positive regulation of lipid storage; GO:0014823 response to activity; GO:0016491 oxidoreductase activity; GO:0017085 response to insecticide; GO:0018454 acetoacetyl-CoA reductase activity; GO:0019367 fatty acid elongation, saturated fatty acid; GO:0020015 glycosome; GO:0021766 hippocampus development; GO:0030148 sphingolipid biosynthetic process; GO:0030198 extracellular matrix organization; GO:0030308 negative regulation of cell growth; GO:0030497 fatty acid elongation; GO:0030539 male genitalia development; GO:0031012 extracellular matrix; GO:0031667 response to nutrient levels; GO:0031669 cellular response to nutrient levels; GO:0032502 developmental process; GO:0032870 cellular response to hormone stimulus; GO:0033197 response to vitamin E; GO:0033327 Leydig cell differentiation; GO:0033555 multicellular organismal response to stress; GO:0033591 response to L-ascorbic acid; GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0035338 long-chain fatty-acyl-CoA biosynthetic process; GO:0042445 hormone metabolic process; GO:0042761 very long-chain fatty acid biosynthetic process; GO:0043231 intracellular membrane-bounded organelle; GO:0043627 response to estrogen; GO:0045111 intermediate filament cytoskeleton; GO:0045471 response to ethanol; GO:0045703 ketoreductase activity; GO:0046685 response to arsenic-containing substance; GO:0046686 response to cadmium ion; GO:0047035 testosterone dehydrogenase (NAD+) activity; GO:0047044 androstan-3-alpha,17-beta-diol dehydrogenase (NAD+) activity; GO:0047045 testosterone dehydrogenase (NADP+) activity; GO:0048545 response to steroid hormone; GO:0051412 response to corticosterone; GO:0060992 response to fungicide; GO:0070542 response to fatty acid; GO:0071236 cellular response to antibiotic; GO:0071371 cellular response to gonadotropin stimulus; GO:0141040 very-long-chain 3-oxoacyl-CoA reductase activity
KEGG
EC: ec:1.1.1.330, ec:1.1.1.62 | KO: K10251 | Pathway: 00062, 01040, 01100, 01110, 01212 | Module: M00415 | BRITE: 00001, 01000, 01004
Biological context

Connected feature records

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