West Indian T2T · mRNA

Pa12g2293.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,536
bp
Pa12:46,967,883–46,976,336
genomic location
Record overview

Feature identity

Identifier
Pa12g2293.1
Feature type
mRNA
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
1,536 bp
Genomic location
Pa12:46,967,883–46,976,336
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC103714982 | Seed ortholog: 337451.A0A443PZA9 | COG: S | eggNOG OG: Asp@131567|ED-10, Asp@2759|Xt-17!, Asp@3398|GNO-36, SapB_1@131567|A-1*, SapB_1@2759|C-2, SapB_2@131567|C-2
Gene Ontology
GO:0000045 autophagosome assembly; GO:0000324 fungal-type vacuole; GO:0000325 plant-type vacuole; GO:0000425 pexophagy; GO:0001664 G protein-coupled receptor binding; GO:0001666 response to hypoxia; GO:0001737 establishment of imaginal disc-derived wing hair orientation; GO:0001822 kidney development; GO:0001823 mesonephros development; GO:0001865 NK T cell differentiation; GO:0002003 angiotensin maturation; GO:0002016 regulation of blood volume by renin-angiotensin; GO:0002018 renin-angiotensin regulation of aldosterone production; GO:0002020 protease binding; GO:0002034 maintenance of blood vessel diameter homeostasis by renin-angiotensin; GO:0003335 corneocyte development; GO:0003406 retinal pigment epithelium development; GO:0003674 molecular_function; GO:0004175 endopeptidase activity; GO:0004190 aspartic-type endopeptidase activity; GO:0004197 cysteine-type endopeptidase activity; GO:0004767 sphingomyelin phosphodiesterase activity; GO:0005102 signaling receptor binding; GO:0005159 insulin-like growth factor receptor binding; GO:0005515 protein binding; GO:0005543 phospholipid binding; GO:0005575 cellular_component; GO:0005576 extracellular region; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005764 lysosome; GO:0005765 lysosomal membrane; GO:0005768 endosome; GO:0005769 early endosome; GO:0005770 late endosome; GO:0005771 multivesicular body; GO:0005773 vacuole; GO:0005776 autophagosome; GO:0005783 endoplasmic reticulum; GO:0005789 endoplasmic reticulum membrane; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0006508 proteolysis; GO:0006629 lipid metabolic process; GO:0006664 glycolipid metabolic process; GO:0006665 sphingolipid metabolic process; GO:0006672 ceramide metabolic process; GO:0006678 glucosylceramide metabolic process; GO:0006683 galactosylceramide catabolic process; GO:0006685 sphingomyelin catabolic process; GO:0006886 intracellular protein transport; GO:0006887 exocytosis; GO:0006914 autophagy; GO:0006915 apoptotic process; GO:0007041 lysosomal transport; GO:0007193 adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway; GO:0007306 egg chorion assembly; GO:0007585 respiratory gaseous exchange by respiratory system; GO:0007605 sensory perception of sound; GO:0007623 circadian rhythm; GO:0008150 biological_process; GO:0008217 regulation of blood pressure; GO:0008233 peptidase activity; GO:0008584 male gonad development; GO:0009306 protein secretion; GO:0009410 response to xenobiotic stimulus; GO:0009506 plasmodesma; GO:0009617 response to bacterium; GO:0009749 response to glucose; GO:0009755 hormone-mediated signaling pathway; GO:0009887 animal organ morphogenesis; GO:0010008 endosome membrane; GO:0010467 gene expression; GO:0010506 regulation of autophagy; GO:0012501 programmed cell death; GO:0016020 membrane; GO:0016235 aggresome; GO:0016236 macroautophagy; GO:0016237 microautophagy; GO:0016540 protein autoprocessing; GO:0016787 hydrolase activity; GO:0019216 regulation of lipid metabolic process; GO:0019882 antigen processing and presentation; GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II; GO:0021702 cerebellar Purkinje cell differentiation; GO:0030149 sphingolipid catabolic process; GO:0030163 protein catabolic process; GO:0030290 sphingolipid activator protein activity; GO:0030424 axon; GO:0030882 lipid antigen binding; GO:0031012 extracellular matrix; GO:0031640 killing of cells of another organism; GO:0031667 response to nutrient levels; GO:0031904 endosome lumen; GO:0032009 early phagosome; GO:0032258 cytoplasm to vacuole targeting by the Cvt pathway; GO:0032496 response to lipopolysaccharide; GO:0032991 protein-containing complex; GO:0033189 response to vitamin A; GO:0033619 membrane protein proteolysis; GO:0034614 cellular response to reactive oxygen species; GO:0035577 azurophil granule membrane; GO:0035580 specific granule lumen; GO:0035902 response to immobilization stress; GO:0036021 endolysosome lumen; GO:0038020 insulin receptor recycling; GO:0038166 angiotensin-activated signaling pathway; GO:0042159 lipoprotein catabolic process; GO:0042277 peptide binding; GO:0042552 myelination; GO:0042599 lamellar body; GO:0042600 egg chorion; GO:0042742 defense response to bacterium; GO:0042756 drinking behavior; GO:0042802 identical protein binding; GO:0042803 protein homodimerization activity; GO:0043025 neuronal cell body; GO:0043065 positive regulation of apoptotic process; GO:0043129 surfactant homeostasis; GO:0043202 lysosomal lumen; GO:0043408 regulation of MAPK cascade; GO:0043410 positive regulation of MAPK cascade; GO:0044321 response to leptin; GO:0045087 innate immune response; GO:0045121 membrane raft; GO:0045169 fusome; GO:0045177 apical part of cell; GO:0045334 clathrin-coated endocytic vesicle; GO:0045335 phagocytic vesicle; GO:0045476 nurse cell apoptotic process; GO:0046513 ceramide biosynthetic process; GO:0046686 response to cadmium ion; GO:0046836 glycolipid transport; GO:0046931 pore complex assembly; GO:0048469 cell maturation; GO:0048589 developmental growth; GO:0050829 defense response to Gram-negative bacterium; GO:0050877 nervous system process; GO:0050885 neuromuscular process controlling balance; GO:0051345 positive regulation of hydrolase activity; GO:0051384 response to glucocorticoid; GO:0051591 response to cAMP; GO:0055088 lipid homeostasis; GO:0055093 response to hyperoxia; GO:0060073 micturition; GO:0060561 apoptotic process involved in morphogenesis; GO:0060736 prostate gland growth; GO:0060742 epithelial cell differentiation involved in prostate gland development; GO:0061061 muscle structure development; GO:0062040 fungal biofilm matrix; GO:0070001 aspartic-type peptidase activity; GO:0070062 extracellular exosome; GO:0070201 regulation of establishment of protein localization; GO:0070305 response to cGMP; GO:0070492 oligosaccharide binding; GO:0070741 response to interleukin-6; GO:0070841 inclusion body assembly; GO:0070848 response to growth factor; GO:0070849 response to epidermal growth factor; GO:0071260 cellular response to mechanical stimulus; GO:0071466 cellular response to xenobiotic stimulus; GO:0071484 cellular response to light intensity; GO:0071548 response to dexamethasone; GO:0071732 cellular response to nitric oxide; GO:0072051 juxtaglomerular apparatus development; GO:0090102 cochlea development; GO:0090659 walking behavior; GO:0097110 scaffold protein binding; GO:0097194 execution phase of apoptosis; GO:0097208 alveolar lamellar body; GO:0097300 programmed necrotic cell death; GO:0097486 multivesicular body lumen; GO:0097718 disordered domain specific binding; GO:0098591 external side of apical plasma membrane; GO:0098830 presynaptic endosome; GO:0098982 GABA-ergic synapse; GO:0099003 vesicle-mediated transport in synapse; GO:0099503 secretory vesicle; GO:0099532 synaptic vesicle endosomal processing; GO:0140911 pore-forming activity; GO:0160317 endolysosomal intralumenal vesicle membrane; GO:1901143 insulin catabolic process; GO:1903575 cornified envelope assembly; GO:1904016 response to Thyroglobulin triiodothyronine; GO:1904724 tertiary granule lumen; GO:1904813 ficolin-1-rich granule lumen; GO:1905146 lysosomal protein catabolic process; GO:1905572 ganglioside GM1 transport to membrane; GO:1905573 ganglioside GM1 binding; GO:1905574 ganglioside GM2 binding; GO:1905575 ganglioside GM3 binding; GO:1905576 ganglioside GT1b binding; GO:1905577 ganglioside GP1c binding; GO:7770043 lipid chaperone activity
KEGG
EC: ec:3.4.23.40 | KO: K08245 | Pathway: 00600, 01100, 04071, 04138, 04140, 04142, 04210, 04614, 04915, 04924, 05152, 05415 | BRITE: 00001, 01000, 01002
Biological context

Connected feature records

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