Pa11g1887.1

West Indian T2T · mRNA

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,279: bp
Pa11:47,308,330–47,336,635: genomic location

Record overview

Feature identity

Identifier: Pa11g1887.1
Feature type: mRNA
Genome collection: West Indian T2T
Organism: Persea americana-West Indian
Sequence length: 3,279 bp
Genomic location: Pa11:47,308,330–47,336,635
Strand: −

Open original Tripal record

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: Pa11g1887

eggNOG: Preferred name: POLD1 | Seed ortholog: 337451.A0A443PPX9 | COG: S | eggNOG OG: DNA_pol_B@131567|A-1, DNA_pol_B@2759|BM-8, DNA_pol_B_exo1@131567|A-1, DNA_pol_B_exo1@2759|Bk-8, zf-C4pol@131567|A-1*, zf-C4pol@2759|C-2
Gene Ontology: GO:0000731 DNA synthesis involved in DNA repair; GO:0003677 DNA binding; GO:0003682 chromatin binding; GO:0003684 damaged DNA binding; GO:0003887 DNA-directed DNA polymerase activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006259 DNA metabolic process; GO:0006260 DNA replication; GO:0006261 DNA-templated DNA replication; GO:0006271 DNA strand elongation involved in DNA replication; GO:0006278 RNA-templated DNA biosynthetic process; GO:0006281 DNA repair; GO:0006287 base-excision repair, gap-filling; GO:0006297 nucleotide-excision repair, DNA gap filling; GO:0006303 double-strand break repair via nonhomologous end joining; GO:0008270 zinc ion binding; GO:0008296 3'-5'-DNA exonuclease activity; GO:0008310 single-stranded DNA 3'-5' DNA exonuclease activity; GO:0008408 3'-5' exonuclease activity; GO:0009411 response to UV; GO:0019899 enzyme binding; GO:0034061 DNA polymerase activity; GO:0034644 cellular response to UV; GO:0043137 DNA replication, removal of RNA primer; GO:0045004 DNA replication proofreading; GO:0045005 DNA-templated DNA replication maintenance of fidelity; GO:0055089 fatty acid homeostasis; GO:0060090 molecular adaptor activity; GO:0070987 error-free translesion synthesis; GO:0071897 DNA biosynthetic process; GO:1902983 DNA strand elongation involved in mitotic DNA replication; GO:1903459 mitotic DNA replication lagging strand elongation; GO:1904161 DNA synthesis involved in UV-damage excision repair
KEGG: EC: ec:2.7.7.7 | KO: K02327 | Pathway: 03030, 03410, 03420, 03430, 03440 | BRITE: 00001, 01000, 01612, 03032, 03400

Biological context