West Indian T2T · mRNA

Pa11g1750.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

330
bp
Pa11:45,547,097–45,549,420
genomic location
Record overview

Feature identity

Identifier
Pa11g1750.1
Feature type
mRNA
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
330 bp
Genomic location
Pa11:45,547,097–45,549,420
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: RAB1A, rab1ba, ypt-1 | Seed ortholog: 1423351.A0A074RRU1, 375764.ENSSORP00005006117, 55188.A0A2H5Q3S1 | COG: S | eggNOG OG: Ras@131567|kE-27, Ras@2759|BXI-35
Gene Ontology
GO:0000045 autophagosome assembly; GO:0000139 Golgi membrane; GO:0000149 SNARE binding; GO:0000281 mitotic cytokinesis; GO:0000325 plant-type vacuole; GO:0000407 phagophore assembly site; GO:0001675 acrosome assembly; GO:0003674 molecular_function; GO:0003924 GTPase activity; GO:0003925 G protein activity; GO:0005515 protein binding; GO:0005525 GTP binding; GO:0005575 cellular_component; GO:0005576 extracellular region; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005769 early endosome; GO:0005783 endoplasmic reticulum; GO:0005789 endoplasmic reticulum membrane; GO:0005793 endoplasmic reticulum-Golgi intermediate compartment; GO:0005794 Golgi apparatus; GO:0005795 Golgi stack; GO:0005801 cis-Golgi network; GO:0005802 trans-Golgi network; GO:0005811 lipid droplet; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0006886 intracellular protein transport; GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum; GO:0006897 endocytosis; GO:0006914 autophagy; GO:0006971 hypotonic response; GO:0007030 Golgi organization; GO:0007112 male meiosis cytokinesis; GO:0007264 small GTPase-mediated signal transduction; GO:0008089 anterograde axonal transport; GO:0008150 biological_process; GO:0009306 protein secretion; GO:0009506 plasmodesma; GO:0009536 plastid; GO:0009555 pollen development; GO:0009617 response to bacterium; GO:0009860 pollen tube growth; GO:0010608 post-transcriptional regulation of gene expression; GO:0016020 membrane; GO:0016192 vesicle-mediated transport; GO:0016236 macroautophagy; GO:0016477 cell migration; GO:0019068 virion assembly; GO:0020016 ciliary pocket; GO:0030133 transport vesicle; GO:0030252 growth hormone secretion; GO:0030334 regulation of cell migration; GO:0030742 GTP-dependent protein binding; GO:0031012 extracellular matrix; GO:0031143 pseudopodium; GO:0031410 cytoplasmic vesicle; GO:0031521 spitzenkorper; GO:0031982 vesicle; GO:0031985 Golgi cisterna; GO:0032024 positive regulation of insulin secretion; GO:0032154 cleavage furrow; GO:0032258 cytoplasm to vacuole targeting by the Cvt pathway; GO:0032402 melanosome transport; GO:0032456 endocytic recycling; GO:0032482 Rab protein signal transduction; GO:0032588 trans-Golgi network membrane; GO:0032757 positive regulation of interleukin-8 production; GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane; GO:0033500 carbohydrate homeostasis; GO:0034045 phagophore assembly site membrane; GO:0034067 protein localization to Golgi apparatus; GO:0034446 substrate adhesion-dependent cell spreading; GO:0034497 protein localization to phagophore assembly site; GO:0034498 early endosome to Golgi transport; GO:0035493 SNARE complex assembly; GO:0035494 SNARE complex disassembly; GO:0042470 melanosome; GO:0042742 defense response to bacterium; GO:0043025 neuronal cell body; GO:0043539 protein serine/threonine kinase activator activity; GO:0045202 synapse; GO:0045335 phagocytic vesicle; GO:0046597 host-mediated suppression of symbiont invasion; GO:0047496 vesicle transport along microtubule; GO:0048194 Golgi vesicle budding; GO:0048210 Golgi vesicle fusion to target membrane; GO:0050775 positive regulation of dendrite morphogenesis; GO:0061709 reticulophagy; GO:0062040 fungal biofilm matrix; GO:0070062 extracellular exosome; GO:0070382 exocytic vesicle; GO:0070971 endoplasmic reticulum exit site; GO:0071466 cellular response to xenobiotic stimulus; GO:0080115 myosin XI tail binding; GO:0090110 COPII-coated vesicle cargo loading; GO:0090114 COPII-coated vesicle budding; GO:0090158 endoplasmic reticulum membrane organization; GO:0098793 presynapse; GO:0140164 COG complex binding; GO:0140220 pathogen-containing vacuole; GO:1900101 regulation of endoplasmic reticulum unfolded protein response; GO:1903020 positive regulation of glycoprotein metabolic process; GO:1905345 protein localization to cleavage furrow; GO:1905808 positive regulation of synapse pruning; GO:1990261 pre-mRNA catabolic process; GO:2000785 regulation of autophagosome assembly
KEGG
KO: K07874, K07875 | Pathway: 04140, 04144, 05014, 05022, 05130, 05134 | BRITE: 00001, 04031, 04131, 04147
Biological context

Connected feature records

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