West Indian T2T · mRNA

Pa09g2138.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

864
bp
Pa09:46,657,911–46,667,170
genomic location
Record overview

Feature identity

Identifier
Pa09g2138.1
Feature type
mRNA
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
864 bp
Genomic location
Pa09:46,657,911–46,667,170
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC100844046 | Seed ortholog: 337451.A0A443PYF4 | COG: S | eggNOG OG: Ank_4@131567|PD-18, Ank_4@2759|Blg-25, FYVE@131567|LY-11
Gene Ontology
GO:0000011 vacuole inheritance; GO:0000062 fatty-acyl-CoA binding; GO:0000139 Golgi membrane; GO:0000285 1-phosphatidylinositol-3-phosphate 5-kinase activity; GO:0000329 fungal-type vacuole membrane; GO:0001666 response to hypoxia; GO:0003674 molecular_function; GO:0004674 protein serine/threonine kinase activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005576 extracellular region; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005768 endosome; GO:0005774 vacuolar membrane; GO:0005783 endoplasmic reticulum; GO:0005789 endoplasmic reticulum membrane; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0005911 cell-cell junction; GO:0005930 axoneme; GO:0006612 protein targeting to membrane; GO:0006629 lipid metabolic process; GO:0006661 phosphatidylinositol biosynthetic process; GO:0006869 lipid transport; GO:0006954 inflammatory response; GO:0007033 vacuole organization; GO:0007035 vacuolar acidification; GO:0007040 lysosome organization; GO:0007041 lysosomal transport; GO:0007338 single fertilization; GO:0008150 biological_process; GO:0008270 zinc ion binding; GO:0008289 lipid binding; GO:0008333 endosome to lysosome transport; GO:0009267 cellular response to starvation; GO:0009409 response to cold; GO:0009505 plant-type cell wall; GO:0009507 chloroplast; GO:0009514 glyoxysome; GO:0009536 plastid; GO:0009555 pollen development; GO:0009737 response to abscisic acid; GO:0010008 endosome membrane; GO:0010029 regulation of seed germination; GO:0010162 seed dormancy process; GO:0010256 endomembrane system organization; GO:0010288 response to lead ion; GO:0010511 regulation of phosphatidylinositol biosynthetic process; GO:0012506 vesicle membrane; GO:0015485 cholesterol binding; GO:0016020 membrane; GO:0016301 kinase activity; GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity; GO:0019065 receptor-mediated endocytosis of virus by host cell; GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II; GO:0020011 apicoplast; GO:0030282 bone mineralization; GO:0030447 filamentous growth; GO:0030593 neutrophil chemotaxis; GO:0030670 phagocytic vesicle membrane; GO:0031410 cytoplasmic vesicle; GO:0031901 early endosome membrane; GO:0031902 late endosome membrane; GO:0032266 phosphatidylinositol-3-phosphate binding; GO:0032288 myelin assembly; GO:0032438 melanosome organization; GO:0032791 lead ion binding; GO:0033299 secretion of lysosomal enzymes; GO:0034504 protein localization to nucleus; GO:0035264 multicellular organism growth; GO:0035556 intracellular signal transduction; GO:0036170 filamentous growth of a population of unicellular organisms in response to starvation; GO:0036180 filamentous growth of a population of unicellular organisms in response to biotic stimulus; GO:0036289 peptidyl-serine autophosphorylation; GO:0042147 retrograde transport, endosome to Golgi; GO:0042742 defense response to bacterium; GO:0043813 phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity; GO:0045121 membrane raft; GO:0046854 phosphatidylinositol phosphate biosynthetic process; GO:0048316 seed development; GO:0048471 perinuclear region of cytoplasm; GO:0051245 negative regulation of cellular defense response; GO:0052810 1-phosphatidylinositol-5-kinase activity; GO:0055089 fatty acid homeostasis; GO:0055092 sterol homeostasis; GO:0060840 artery development; GO:0061517 macrophage proliferation; GO:0070300 phosphatidic acid binding; GO:0070309 lens fiber cell morphogenesis; GO:0070772 PAS complex; GO:0080025 phosphatidylinositol-3,5-bisphosphate binding; GO:0090332 stomatal closure; GO:0090382 phagosome maturation; GO:0090385 phagosome-lysosome fusion; GO:0097352 autophagosome maturation; GO:0098773 skin epidermis development; GO:0106310 protein serine kinase activity; GO:0141111 positive regulation of cGAS/STING signaling pathway; GO:1900140 regulation of seedling development; GO:1903100 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate metabolic process; GO:1903426 regulation of reactive oxygen species biosynthetic process; GO:1904562 phosphatidylinositol 5-phosphate metabolic process; GO:2000785 regulation of autophagosome assembly
KEGG
EC: ec:2.7.1.150 | KO: K00921, K02580, K06867, K14508, K17554, K21412, K21442, K26480, K27751 | Pathway: 00562, 01100, 04070, 04075, 04145, 04330, 04624, 04810 | BRITE: 00001, 01000, 01009, 03000, 03036, 04121, 04131
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.