Feature identity
- Identifier
- PaHa01g21180.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 327 bp
- Genomic location
- 1:41,633,289–41,638,187
- Strand
- +
Hass · mRNA
PaHa01g21180.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 327
- bp
- 1:41,633,289–41,638,187
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa01g21180
- eggNOG
- Preferred name: LOC108990522 | Seed ortholog: 337451.A0A3S3MPJ9 | eggNOG OG: TFIIS_C@131567|d-5
- Gene Ontology
- GO:0001650 fibrillar center; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0003899 DNA-directed RNA polymerase activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005730 nucleolus; GO:0005736 RNA polymerase I complex; GO:0006139 nucleobase-containing compound metabolic process; GO:0006354 DNA-templated transcription elongation; GO:0006355 regulation of DNA-templated transcription; GO:0006360 transcription by RNA polymerase I; GO:0006361 transcription initiation at RNA polymerase I promoter; GO:0006362 transcription elongation by RNA polymerase I; GO:0006363 termination of RNA polymerase I transcription; GO:0008150 biological_process; GO:0008270 zinc ion binding; GO:0031981 nuclear lumen; GO:0042790 nucleolar large rRNA transcription by RNA polymerase I
- KEGG
- KO: K03000 | Pathway: 03020 | BRITE: 00001, 01611, 03021
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa01g21180.1-protein
derives_frommRNAPaHa01g21180.1
mRNAPaHa01g21180.1
part_ofgenePaHa01g21180
CDS
part_ofPaHa01g21180.1-CDS-1-1787993825:41633289..41633355mRNAPaHa01g21180.1
CDS
part_ofPaHa01g21180.1-CDS-1-1787993825:41634576..41634616mRNAPaHa01g21180.1
CDS
part_ofPaHa01g21180.1-CDS-1-1787993825:41637788..41637871mRNAPaHa01g21180.1
CDS
part_ofPaHa01g21180.1-CDS-1-1787993825:41637976..41638032mRNAPaHa01g21180.1
CDS
part_ofPaHa01g21180.1-CDS-1-1787993825:41638110..41638187mRNAPaHa01g21180.1
exon
part_ofPaHa01g21180.1-exon-1-1787993825:41633289..41633355mRNAPaHa01g21180.1
exon
part_ofPaHa01g21180.1-exon-1-1787993825:41634576..41634616mRNAPaHa01g21180.1
exon
part_ofPaHa01g21180.1-exon-1-1787993825:41637788..41637871mRNAPaHa01g21180.1
exon
part_ofPaHa01g21180.1-exon-1-1787993825:41637976..41638032mRNAPaHa01g21180.1
exon
part_ofPaHa01g21180.1-exon-1-1787993825:41638110..41638187mRNAPaHa01g21180.1
