Feature identity
- Identifier
- PaHa01g21440.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 978 bp
- Genomic location
- 1:42,542,591–42,558,470
- Strand
- −
Hass · mRNA
PaHa01g21440.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 978
- bp
- 1:42,542,591–42,558,470
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa01g21440
- eggNOG
- Preferred name: LOC104592755 | Seed ortholog: 337451.A0A443NNV1 | COG: S | eggNOG OG: Myb_DNA-bind_4@131567|v-6, Myb_DNA-bind_4@2759|AN-7, Myb_DNA-bind_4@3193|sL-18, Myb_DNA-bind_4@3398|AbS-21, Myb_DNA-bind_4@35493|NK-14
- Gene Ontology
- GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0042803 protein homodimerization activity; GO:0045892 negative regulation of DNA-templated transcription; GO:0050777 negative regulation of immune response; GO:0071219 cellular response to molecule of bacterial origin
- KEGG
- EC: ec:2.7.7.1, ec:2.7.7.18 | KO: K06210 | Pathway: 00760, 01100, 01240 | Module: M00115, M00912 | BRITE: 00001, 01000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa01g21440.1-protein
derives_frommRNAPaHa01g21440.1
mRNAPaHa01g21440.1
part_ofgenePaHa01g21440
CDS
part_ofPaHa01g21440.1-CDS-1-1787993825:42542591..42542874mRNAPaHa01g21440.1
CDS
part_ofPaHa01g21440.1-CDS-1-1787993825:42556821..42556850mRNAPaHa01g21440.1
CDS
part_ofPaHa01g21440.1-CDS-1-1787993825:42557807..42558470mRNAPaHa01g21440.1
exon
part_ofPaHa01g21440.1-exon-1-1787993825:42542591..42542874mRNAPaHa01g21440.1
exon
part_ofPaHa01g21440.1-exon-1-1787993825:42556821..42556850mRNAPaHa01g21440.1
exon
part_ofPaHa01g21440.1-exon-1-1787993825:42557807..42558470mRNAPaHa01g21440.1
