West Indian T2T · mRNA

Pa06g1973.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

735
bp
Pa06:45,470,912–45,474,787
genomic location
Record overview

Feature identity

Identifier
Pa06g1973.1
Feature type
mRNA
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
735 bp
Genomic location
Pa06:45,470,912–45,474,787
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC107934718 | Seed ortholog: 93759.A0A1R3KS84 | COG: S | eggNOG OG: E1-E2_ATPase@131567|B-2, E1-E2_ATPase@2759|As-9!, Hydrolase@131567|AXV-20, Hydrolase@2759|Eno-35, PhoLip_ATPase_C@131567|A-1*, PhoLip_ATPase_C@2759|F-3, PhoLip_ATPase_C@3398|Oo-17
Gene Ontology
GO:0001701 in utero embryonic development; GO:0002020 protease binding; GO:0002237 response to molecule of bacterial origin; GO:0002238 response to molecule of fungal origin; GO:0002329 pre-B cell differentiation; GO:0003011 involuntary skeletal muscle contraction; GO:0004383 guanylate cyclase activity; GO:0005319 lipid carrier activity; GO:0005515 protein binding; GO:0005524 ATP binding; GO:0005634 nucleus; GO:0005768 endosome; GO:0005789 endoplasmic reticulum membrane; GO:0005794 Golgi apparatus; GO:0005802 trans-Golgi network; GO:0006182 cGMP biosynthetic process; GO:0006811 monoatomic ion transport; GO:0006812 monoatomic cation transport; GO:0006855 xenobiotic transmembrane transport; GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum; GO:0006893 Golgi to plasma membrane transport; GO:0006895 Golgi to endosome transport; GO:0006897 endocytosis; GO:0007030 Golgi organization; GO:0007033 vacuole organization; GO:0007124 pseudohyphal growth; GO:0007165 signal transduction; GO:0007339 binding of sperm to zona pellucida; GO:0007409 axonogenesis; GO:0007605 sensory perception of sound; GO:0007612 learning; GO:0008104 intracellular protein localization; GO:0008150 biological_process; GO:0008206 bile acid metabolic process; GO:0008285 negative regulation of cell population proliferation; GO:0008340 determination of adult lifespan; GO:0009506 plasmodesma; GO:0009792 embryo development ending in birth or egg hatching; GO:0009860 pollen tube growth; GO:0010183 pollen tube guidance; GO:0010447 response to acidic pH; GO:0010831 positive regulation of myotube differentiation; GO:0010842 retina layer formation; GO:0010976 positive regulation of neuron projection development; GO:0010996 response to auditory stimulus; GO:0015075 monoatomic ion transmembrane transporter activity; GO:0015247 aminophospholipid flippase activity; GO:0015662 P-type ion transporter activity; GO:0015721 bile acid and bile salt transport; GO:0015914 phospholipid transport; GO:0015917 aminophospholipid transport; GO:0016192 vesicle-mediated transport; GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity; GO:0021650 vestibulocochlear nerve formation; GO:0030335 positive regulation of cell migration; GO:0031175 neuron projection development; GO:0032534 regulation of microvillus assembly; GO:0034220 monoatomic ion transmembrane transport; GO:0035675 neuromast hair cell development; GO:0035845 photoreceptor cell outer segment organization; GO:0035865 cellular response to potassium ion; GO:0040018 positive regulation of multicellular organism growth; GO:0042472 inner ear morphogenesis; GO:0042742 defense response to bacterium; GO:0042755 eating behavior; GO:0043588 skin development; GO:0045176 apical protein localization; GO:0045332 phospholipid translocation; GO:0045579 positive regulation of B cell differentiation; GO:0045892 negative regulation of DNA-templated transcription; GO:0048194 Golgi vesicle budding; GO:0048364 root development; GO:0048367 shoot system development; GO:0048488 synaptic vesicle endocytosis; GO:0048666 neuron development; GO:0048812 neuron projection morphogenesis; GO:0050832 defense response to fungus; GO:0050884 neuromuscular process controlling posture; GO:0050908 detection of light stimulus involved in visual perception; GO:0055085 transmembrane transport; GO:0060052 neurofilament cytoskeleton organization; GO:0060119 inner ear receptor cell development; GO:0061092 positive regulation of phospholipid translocation; GO:0075293 response to host pH environment; GO:0090554 phosphatidylcholine floppase activity; GO:0090555 phosphatidylethanolamine flippase activity; GO:0090556 phosphatidylserine floppase activity; GO:0097035 regulation of membrane lipid distribution; GO:0098629 trans-Golgi network membrane organization; GO:0120045 stereocilium maintenance; GO:0140326 ATPase-coupled intramembrane lipid carrier activity; GO:0140327 flippase activity; GO:0140331 aminophospholipid translocation; GO:0140345 phosphatidylcholine flippase activity; GO:0140346 phosphatidylserine flippase activity; GO:0150104 transport across blood-brain barrier; GO:0180013 lysophosphatidylserine flippase activity; GO:1901612 cardiolipin binding; GO:1901703 protein localization involved in auxin polar transport; GO:1903307 positive regulation of regulated secretory pathway; GO:1903542 negative regulation of exosomal secretion; GO:1903729 regulation of plasma membrane organization; GO:1905279 regulation of retrograde transport, endosome to Golgi; GO:2000147 positive regulation of cell motility; GO:2001135 regulation of endocytic recycling; GO:2001225 regulation of chloride transport
KEGG
EC: ec:7.6.2.1 | KO: K01530 | Pathway: 04148 | BRITE: 00001, 01000
Biological context

Connected feature records

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