Hass · mRNA

PaHa01g22220.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

369
bp
1:50,365,794–50,366,162
genomic location
Record overview

Feature identity

Identifier
PaHa01g22220.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
369 bp
Genomic location
1:50,365,794–50,366,162
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC107807147 | Seed ortholog: 4097.A0A1S3Y8K5 | COG: S | eggNOG OG: CENP_T_C@131567|A-1*, CENP_T_C@2759|HO-22
Gene Ontology
GO:0000325 plant-type vacuole; GO:0000500 RNA polymerase I upstream activating factor complex; GO:0000786 nucleosome; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0005515 protein binding; GO:0005576 extracellular region; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005730 nucleolus; GO:0005777 peroxisome; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0006325 chromatin organization; GO:0006334 nucleosome assembly; GO:0006355 regulation of DNA-templated transcription; GO:0008150 biological_process; GO:0009414 response to water deprivation; GO:0009506 plasmodesma; GO:0009507 chloroplast; GO:0009536 plastid; GO:0009579 thylakoid; GO:0030527 structural constituent of chromatin; GO:0031507 heterochromatin formation; GO:0042790 nucleolar large rRNA transcription by RNA polymerase I; GO:0042802 identical protein binding; GO:0043505 CENP-A containing nucleosome; GO:0045087 innate immune response; GO:0045943 positive regulation of transcription by RNA polymerase I; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0050829 defense response to Gram-negative bacterium; GO:0051276 chromosome organization; GO:0062040 fungal biofilm matrix
KEGG
EC: ec:2.7.7.7 | KO: K11254 | Pathway: 04613, 05034, 05202, 05203, 05322 | BRITE: 00001, 03036
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa01g22220.1-CDS-1-1787993825:50365794..50366162
part_of
exonPaHa01g22220.1-exon-1-1787993825:50365794..50366162
part_of