West Indian T2T · mRNA

Pa04g2419.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,101
bp
Pa04:50,256,876–50,261,040
genomic location
Record overview

Feature identity

Identifier
Pa04g2419.1
Feature type
mRNA
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
1,101 bp
Genomic location
Pa04:50,256,876–50,261,040
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC116197707 | Seed ortholog: 337451.A0A3S3N8K4 | COG: S | eggNOG OG: Oxidored_FMN@131567|BRM-22, Oxidored_FMN@3193|LDZ-39, Oxidored_FMN@3398|UJB-54
Gene Ontology
GO:0000324 fungal-type vacuole; GO:0003959 NADPH dehydrogenase activity; GO:0005496 steroid binding; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005829 cytosol; GO:0006915 apoptotic process; GO:0008150 biological_process; GO:0008202 steroid metabolic process; GO:0009986 cell surface; GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor; GO:0030446 hyphal cell wall; GO:0035837 ergot alkaloid biosynthetic process; GO:0042562 hormone binding; GO:0071466 cellular response to xenobiotic stimulus; GO:0099130 estrogen binding; GO:0110095 cellular detoxification of aldehyde; GO:1900809 fumigaclavine C biosynthetic process; GO:1990748 cellular detoxification
KEGG
EC: ec:1.3.1.42 | KO: K05894 | Pathway: 00592, 01100, 01110 | Module: M00113 | BRITE: 00001, 01000
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.