Feature identity
- Identifier
- Pa03g0342.1
- Feature type
- mRNA
- Genome collection
- West Indian T2T
- Organism
- Persea americana-West Indian
- Sequence length
- 996 bp
- Genomic location
- Pa03:5,729,531–5,734,402
- Strand
- +
West Indian T2T · mRNA
Pa03g0342.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 996
- bp
- Pa03:5,729,531–5,734,402
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: Pa03g0342
- eggNOG
- Preferred name: CCR1 | Seed ortholog: 337451.A0A443NA91 | COG: COG0451 | eggNOG OG: Epimerase@131567|KJ-12, Epimerase@3398|TBg-32, Epimerase@58023|MrT-29
- Gene Ontology
- GO:0005575 cellular_component; GO:0005737 cytoplasm; GO:0007623 circadian rhythm; GO:0009409 response to cold; GO:0009699 phenylpropanoid biosynthetic process; GO:0009809 lignin biosynthetic process; GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0016621 cinnamoyl-CoA reductase (NADP+) activity; GO:0042754 negative regulation of circadian rhythm
- KEGG
- EC: ec:1.2.1.44 | KO: K09753 | Pathway: 00940, 01100, 01110 | Module: M00039 | BRITE: 00001, 01000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePa03g0342.1-protein
derives_frommRNAPa03g0342.1
mRNAPa03g0342.1
part_ofgenePa03g0342
exon
part_ofPa03g0342.1:1mRNAPa03g0342.1
exon
part_ofPa03g0342.1:2mRNAPa03g0342.1
exon
part_ofPa03g0342.1:3mRNAPa03g0342.1
exon
part_ofPa03g0342.1:4mRNAPa03g0342.1
CDS
part_ofPa03g0342.1:cdsmRNAPa03g0342.1
