West Indian T2T · mRNA

Pa02g3205.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

849
bp
Pa02:79,660,436–79,661,284
genomic location
Record overview

Feature identity

Identifier
Pa02g3205.1
Feature type
mRNA
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
849 bp
Genomic location
Pa02:79,660,436–79,661,284
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: RNH1 | Seed ortholog: 337451.A0A443N618 | eggNOG OG: LRR_6@131567|aX-16
Gene Ontology
GO:0000139 Golgi membrane; GO:0001701 in utero embryonic development; GO:0001818 negative regulation of cytokine production; GO:0002181 cytoplasmic translation; GO:0002221 pattern recognition receptor signaling pathway; GO:0002526 acute inflammatory response; GO:0002674 negative regulation of acute inflammatory response; GO:0002720 positive regulation of cytokine production involved in immune response; GO:0002830 positive regulation of type 2 immune response; GO:0003690 double-stranded DNA binding; GO:0003723 RNA binding; GO:0003725 double-stranded RNA binding; GO:0004175 endopeptidase activity; GO:0005515 protein binding; GO:0005524 ATP binding; GO:0005576 extracellular region; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005783 endoplasmic reticulum; GO:0005794 Golgi apparatus; GO:0005815 microtubule organizing center; GO:0005829 cytosol; GO:0005938 cell cortex; GO:0006402 mRNA catabolic process; GO:0006887 exocytosis; GO:0006915 apoptotic process; GO:0006952 defense response; GO:0006954 inflammatory response; GO:0007015 actin filament organization; GO:0007165 signal transduction; GO:0007231 osmosensory signaling pathway; GO:0007566 embryo implantation; GO:0008104 intracellular protein localization; GO:0008428 ribonuclease inhibitor activity; GO:0008656 cysteine-type endopeptidase activator activity involved in apoptotic process; GO:0009306 protein secretion; GO:0009566 fertilization; GO:0009595 detection of biotic stimulus; GO:0009887 animal organ morphogenesis; GO:0009968 negative regulation of signal transduction; GO:0015631 tubulin binding; GO:0016020 membrane; GO:0016887 ATP hydrolysis activity; GO:0019899 enzyme binding; GO:0019904 protein domain specific binding; GO:0030163 protein catabolic process; GO:0030674 protein-macromolecule adaptor activity; GO:0031021 interphase microtubule organizing center; GO:0031647 regulation of protein stability; GO:0032055 negative regulation of translation in response to stress; GO:0032311 angiogenin-PRI complex; GO:0032495 response to muramyl dipeptide; GO:0032588 trans-Golgi network membrane; GO:0032661 regulation of interleukin-18 production; GO:0032691 negative regulation of interleukin-1 beta production; GO:0032692 negative regulation of interleukin-1 production; GO:0032715 negative regulation of interleukin-6 production; GO:0032731 positive regulation of interleukin-1 beta production; GO:0032736 positive regulation of interleukin-13 production; GO:0032741 positive regulation of interleukin-18 production; GO:0032753 positive regulation of interleukin-4 production; GO:0032754 positive regulation of interleukin-5 production; GO:0032880 regulation of protein localization; GO:0032991 protein-containing complex; GO:0035591 signaling adaptor activity; GO:0035655 interleukin-18-mediated signaling pathway; GO:0036336 dendritic cell migration; GO:0036416 tRNA stabilization; GO:0038187 pattern recognition receptor activity; GO:0040019 positive regulation of embryonic development; GO:0042585 germinal vesicle; GO:0042742 defense response to bacterium; GO:0042802 identical protein binding; GO:0042834 peptidoglycan binding; GO:0043025 neuronal cell body; GO:0043122 regulation of canonical NF-kappaB signal transduction; GO:0043124 negative regulation of canonical NF-kappaB signal transduction; GO:0043487 regulation of RNA stability; GO:0043531 ADP binding; GO:0043565 sequence-specific DNA binding; GO:0044546 NLRP3 inflammasome complex assembly; GO:0045179 apical cortex; GO:0045345 positive regulation of MHC class I biosynthetic process; GO:0045471 response to ethanol; GO:0045630 positive regulation of T-helper 2 cell differentiation; GO:0045751 negative regulation of Toll signaling pathway; GO:0045765 regulation of angiogenesis; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0048471 perinuclear region of cytoplasm; GO:0050727 regulation of inflammatory response; GO:0050728 negative regulation of inflammatory response; GO:0050729 positive regulation of inflammatory response; GO:0050830 defense response to Gram-positive bacterium; GO:0051245 negative regulation of cellular defense response; GO:0051260 protein homooligomerization; GO:0051293 establishment of spindle localization; GO:0051302 regulation of cell division; GO:0051402 neuron apoptotic process; GO:0051604 protein maturation; GO:0051607 defense response to virus; GO:0051656 establishment of organelle localization; GO:0060090 molecular adaptor activity; GO:0060471 cortical granule exocytosis; GO:0060473 cortical granule; GO:0061702 canonical inflammasome complex; GO:0065003 protein-containing complex assembly; GO:0070062 extracellular exosome; GO:0070269 pyroptotic inflammatory response; GO:0070273 phosphatidylinositol-4-phosphate binding; GO:0070373 negative regulation of ERK1 and ERK2 cascade; GO:0070498 interleukin-1-mediated signaling pathway; GO:0071222 cellular response to lipopolysaccharide; GO:0071224 cellular response to peptidoglycan; GO:0071345 cellular response to cytokine stimulus; GO:0071493 cellular response to UV-B; GO:0072558 NLRP1 inflammasome complex; GO:0072559 NLRP3 inflammasome complex; GO:0097110 scaffold protein binding; GO:0097264 self proteolysis; GO:0097300 programmed necrotic cell death; GO:0098586 cellular response to virus; GO:0106333 subcortical maternal complex; GO:0140089 protein storage; GO:0140094 structural constituent of cytoplasmic lattice; GO:0140095 cytoplasmic lattice; GO:0140297 DNA-binding transcription factor binding; GO:0140299 molecular sensor activity; GO:0140374 antiviral innate immune response; GO:0140608 cysteine-type endopeptidase activator activity; GO:0140639 positive regulation of pyroptotic inflammatory response; GO:0140693 molecular condensate scaffold activity; GO:0141201 pyroptotic cell death; GO:1900227 positive regulation of NLRP3 inflammasome complex assembly; GO:1901223 negative regulation of non-canonical NF-kappaB signal transduction; GO:1901224 positive regulation of non-canonical NF-kappaB signal transduction; GO:1901981 phosphatidylinositol phosphate binding; GO:1904784 NLRP1 inflammasome complex assembly; GO:2000321 positive regulation of T-helper 17 cell differentiation; GO:2000553 positive regulation of T-helper 2 cell cytokine production
KEGG
KO: K10268, K12798, K12800, K16634, K20865, K22626, K22664, K22666 | Pathway: 04217, 04621, 04623, 04625, 05132, 05133, 05135, 05164, 05171, 05417 | BRITE: 00001, 04054, 04121, 04131, 04812
Biological context

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