Feature identity
- Identifier
- PaHa01g23640.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 780 bp
- Genomic location
- 1:62,673,939–62,687,640
- Strand
- +
Hass · mRNA
PaHa01g23640.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 780
- bp
- 1:62,673,939–62,687,640
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa01g23640
- eggNOG
- Preferred name: WHY1 | Seed ortholog: 337451.A0A3S3MAW2 | COG: S | eggNOG OG: Whirly@131567|A-1, Whirly@2759|e-6
- Gene Ontology
- GO:0000781 chromosome, telomeric region; GO:0000987 cis-regulatory region sequence-specific DNA binding; GO:0003677 DNA binding; GO:0003697 single-stranded DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0003714 transcription corepressor activity; GO:0003723 RNA binding; GO:0003729 mRNA binding; GO:0005576 extracellular region; GO:0005634 nucleus; GO:0005739 mitochondrion; GO:0006281 DNA repair; GO:0006952 defense response; GO:0009507 chloroplast; GO:0009570 chloroplast stroma; GO:0009627 systemic acquired resistance; GO:0009863 salicylic acid mediated signaling pathway; GO:0032204 regulation of telomere maintenance; GO:0032211 negative regulation of telomere maintenance via telomerase; GO:0042162 telomeric repeat DNA binding; GO:0042644 chloroplast nucleoid; GO:0043565 sequence-specific DNA binding; GO:0045893 positive regulation of DNA-templated transcription; GO:0045910 negative regulation of DNA recombination; GO:0050832 defense response to fungus; GO:1990391 DNA repair complex
- KEGG
- KO: K26559, K26560 | BRITE: 00001, 03400
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa01g23640.1-protein
derives_frommRNAPaHa01g23640.1
mRNAPaHa01g23640.1
part_ofgenePaHa01g23640
CDS
part_ofPaHa01g23640.1-CDS-1-1787993825:62673939..62674152mRNAPaHa01g23640.1
CDS
part_ofPaHa01g23640.1-CDS-1-1787993825:62674267..62674361mRNAPaHa01g23640.1
CDS
part_ofPaHa01g23640.1-CDS-1-1787993825:62674533..62674625mRNAPaHa01g23640.1
CDS
part_ofPaHa01g23640.1-CDS-1-1787993825:62683392..62683486mRNAPaHa01g23640.1
CDS
part_ofPaHa01g23640.1-CDS-1-1787993825:62686107..62686180mRNAPaHa01g23640.1
CDS
part_ofPaHa01g23640.1-CDS-1-1787993825:62686900..62686988mRNAPaHa01g23640.1
CDS
part_ofPaHa01g23640.1-CDS-1-1787993825:62687521..62687640mRNAPaHa01g23640.1
exon
part_ofPaHa01g23640.1-exon-1-1787993825:62673939..62674152mRNAPaHa01g23640.1
exon
part_ofPaHa01g23640.1-exon-1-1787993825:62674267..62674361mRNAPaHa01g23640.1
exon
part_ofPaHa01g23640.1-exon-1-1787993825:62674533..62674625mRNAPaHa01g23640.1
exon
part_ofPaHa01g23640.1-exon-1-1787993825:62683392..62683486mRNAPaHa01g23640.1
exon
part_ofPaHa01g23640.1-exon-1-1787993825:62686107..62686180mRNAPaHa01g23640.1
exon
part_ofPaHa01g23640.1-exon-1-1787993825:62686900..62686988mRNAPaHa01g23640.1
exon
part_ofPaHa01g23640.1-exon-1-1787993825:62687521..62687640mRNAPaHa01g23640.1
