Feature identity
- Identifier
- Pa02g2706.1
- Feature type
- mRNA
- Genome collection
- West Indian T2T
- Organism
- Persea americana-West Indian
- Sequence length
- 1,014 bp
- Genomic location
- Pa02:71,054,425–71,057,462
- Strand
- −
West Indian T2T · mRNA
Pa02g2706.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,014
- bp
- Pa02:71,054,425–71,057,462
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: Pa02g2706
- eggNOG
- Preferred name: SIGC | Seed ortholog: 337451.A0A3S4N790 | COG: COG0568 | eggNOG OG: Sigma70_r2@131567|AQM-18!, Sigma70_r2@33090|NGm-29, Sigma70_r2@58023|SCd-31, Sigma70_r3@131567|C-2!, Sigma70_r3@58023|Em-10, Sigma70_r4@131567|Bnn-30, Sigma70_r4@58023|GWY-43
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003899 DNA-directed RNA polymerase activity; GO:0006352 DNA-templated transcription initiation; GO:0009507 chloroplast; GO:0016987 sigma factor activity; GO:0071482 cellular response to light stimulus; GO:2001141 regulation of RNA biosynthetic process
- KEGG
- KO: K03093 | BRITE: 00001, 03021
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePa02g2706.1-protein
derives_frommRNAPa02g2706.1
mRNAPa02g2706.1
part_ofgenePa02g2706
exon
part_ofPa02g2706.1:1mRNAPa02g2706.1
exon
part_ofPa02g2706.1:2mRNAPa02g2706.1
exon
part_ofPa02g2706.1:3mRNAPa02g2706.1
exon
part_ofPa02g2706.1:4mRNAPa02g2706.1
exon
part_ofPa02g2706.1:5mRNAPa02g2706.1
CDS
part_ofPa02g2706.1:cdsmRNAPa02g2706.1
