West Indian T2T · mRNA

Pa02g1866.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

630
bp
Pa02:37,131,900–37,136,387
genomic location
Record overview

Feature identity

Identifier
Pa02g1866.1
Feature type
mRNA
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
630 bp
Genomic location
Pa02:37,131,900–37,136,387
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC107946186 | Seed ortholog: 337451.A0A3S4N5W4 | COG: S | eggNOG OG: NUDIX@131567|AW-7!, NUDIX@3398|vZw-38, NUDIX@58023|cWA-32
Gene Ontology
GO:0000287 magnesium ion binding; GO:0000298 endopolyphosphatase activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005576 extracellular region; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006798 polyphosphate catabolic process; GO:0007267 cell-cell signaling; GO:0008270 zinc ion binding; GO:0008486 diphosphoinositol-polyphosphate diphosphatase activity; GO:0008796 bis(5'-nucleosyl)-tetraphosphatase activity; GO:0009117 nucleotide metabolic process; GO:0015959 diadenosine polyphosphate metabolic process; GO:0015961 diadenosine polyphosphate catabolic process; GO:0030145 manganese ion binding; GO:0030430 host cell cytoplasm; GO:0030515 snoRNA binding; GO:0030643 intracellular phosphate ion homeostasis; GO:0032958 inositol phosphate biosynthetic process; GO:0034431 bis(5'-adenosyl)-hexaphosphatase activity; GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity; GO:0042025 host cell nucleus; GO:0042593 glucose homeostasis; GO:0042594 response to starvation; GO:0043647 inositol phosphate metabolic process; GO:0045202 synapse; GO:0046488 phosphatidylinositol metabolic process; GO:0052745 inositol phosphate phosphatase activity; GO:0052840 inositol diphosphate tetrakisphosphate diphosphatase activity; GO:0052842 inositol diphosphate pentakisphosphate diphosphatase activity; GO:0052843 inositol-1-diphosphate-2,3,4,5,6-pentakisphosphate diphosphatase activity; GO:0052845 inositol-5-diphosphate-1,2,3,4,6-pentakisphosphate diphosphatase activity; GO:0052846 inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 1-diphosphatase activity; GO:0052847 inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity; GO:0052848 inositol-3,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity; GO:0055088 lipid homeostasis; GO:0071544 diphosphoinositol polyphosphate catabolic process; GO:0071545 inositol phosphate catabolic process; GO:0098978 glutamatergic synapse; GO:0110154 RNA decapping; GO:0140932 5'-(N(7)-methyl 5'-triphosphoguanosine)-[mRNA] diphosphatase activity; GO:0140933 5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity; GO:1901907 diadenosine pentaphosphate catabolic process; GO:1901909 diadenosine hexaphosphate catabolic process; GO:1901911 adenosine 5'-(hexahydrogen pentaphosphate) catabolic process; GO:1990174 phosphodiesterase decapping endonuclease activity
KEGG
EC: ec:3.6.1.52 | KO: K07766 | Pathway: 03010, 05171 | BRITE: 00001, 01000
Biological context

Connected feature records

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