West Indian T2T · mRNA

Pa02g1621.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

342
bp
Pa02:29,035,631–29,041,840
genomic location
Record overview

Feature identity

Identifier
Pa02g1621.1
Feature type
mRNA
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
342 bp
Genomic location
Pa02:29,035,631–29,041,840
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC107779818, LOC107898813 | Seed ortholog: 29730.A0A0D2U0T7, 4113.M1BNZ4 | COG: S | eggNOG OG: SUI1@131567|A-1, SUI1@1437183|Axg-27, SUI1@2759|a-5, SUI1@3193|aN-18, SUI1@33090|QI-16, SUI1@3398|AMg-23, SUI1@3633|DTo-38
Gene Ontology
GO:0001731 formation of translation preinitiation complex; GO:0002183 cytoplasmic translational initiation; GO:0003674 molecular_function; GO:0003723 RNA binding; GO:0003729 mRNA binding; GO:0003743 translation initiation factor activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006413 translational initiation; GO:0006446 regulation of translational initiation; GO:0006450 regulation of translational fidelity; GO:0008135 translation factor activity, RNA binding; GO:0010608 post-transcriptional regulation of gene expression; GO:0016282 eukaryotic 43S preinitiation complex; GO:0031369 translation initiation factor binding; GO:0033290 eukaryotic 48S preinitiation complex; GO:0043024 ribosomal small subunit binding; GO:0043614 multi-eIF complex; GO:0071456 cellular response to hypoxia; GO:1905746 positive regulation of mRNA cis splicing, via spliceosome; GO:1990145 maintenance of translational fidelity
KEGG
EC: ec:2.3.2.27 | KO: K03113 | Pathway: 00563, 01100 | Module: M00065 | BRITE: 00001, 03012
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.