Feature identity
- Identifier
- Pa02g1280.2
- Feature type
- mRNA
- Genome collection
- West Indian T2T
- Organism
- Persea americana-West Indian
- Sequence length
- 2,253 bp
- Genomic location
- Pa02:20,466,785–20,469,227
- Strand
- −
West Indian T2T · mRNA
Pa02g1280.2
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,253
- bp
- Pa02:20,466,785–20,469,227
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: Pa02g1280
- eggNOG
- Preferred name: FHY3 | Seed ortholog: 337451.A0A443N2S5 | COG: S | eggNOG OG: MULE@131567|BE-8, MULE@1437183|AKW-21!, MULE@2759|Du-10, MULE@3398|Wd-16, SWIM@131567|Z-5, SWIM@1437183|Bxs-27!, SWIM@3398|Afq-22
- Gene Ontology
- GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0007623 circadian rhythm; GO:0009585 red, far-red light phototransduction; GO:0009639 response to red or far red light; GO:0010017 red or far-red light signaling pathway; GO:0010018 far-red light signaling pathway; GO:0010218 response to far red light; GO:0042753 positive regulation of circadian rhythm; GO:0045893 positive regulation of DNA-templated transcription; GO:1900056 negative regulation of leaf senescence
- KEGG
- EC: ec:3.4.16.5 | KO: K13289, K17604, K26145 | Pathway: 04142 | BRITE: 00001, 01000, 01002, 01009, 03110, 04131, 04147, 04990
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePa02g1280.2-protein
derives_frommRNAPa02g1280.2
exon
part_ofPa02g1280.1:1mRNAPa02g1280.2
exon
part_ofPa02g1280.1:2mRNAPa02g1280.2
mRNAPa02g1280.2
part_ofgenePa02g1280
exon
part_ofPa02g1280.2:4mRNAPa02g1280.2
CDS
part_ofPa02g1280.2:cdsmRNAPa02g1280.2
