West Indian T2T · mRNA

Pa02g1032.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,887
bp
Pa02:16,289,735–16,322,435
genomic location
Record overview

Feature identity

Identifier
Pa02g1032.1
Feature type
mRNA
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
1,887 bp
Genomic location
Pa02:16,289,735–16,322,435
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: RH37 | Seed ortholog: 337451.A0A3S3M3I8 | COG: S | eggNOG OG: DEAD@131567|Fpr-34, DEAD@2759|PnN-44, DEAD@3398|AfYz-65, DEAD@35493|ADZu-58, Helicase_C|82CO8R@131567, Helicase_C|82CO8R@58023
Gene Ontology
GO:0000390 spliceosomal complex disassembly; GO:0002183 cytoplasmic translational initiation; GO:0002753 cytoplasmic pattern recognition receptor signaling pathway; GO:0003729 mRNA binding; GO:0005515 protein binding; GO:0005730 nucleolus; GO:0005777 peroxisome; GO:0005829 cytosol; GO:0006139 nucleobase-containing compound metabolic process; GO:0006413 translational initiation; GO:0007059 chromosome segregation; GO:0007140 male meiotic nuclear division; GO:0007141 male meiosis I; GO:0007276 gamete generation; GO:0007281 germ cell development; GO:0007283 spermatogenesis; GO:0007420 brain development; GO:0008150 biological_process; GO:0008406 gonad development; GO:0008625 extrinsic apoptotic signaling pathway via death domain receptors; GO:0009507 chloroplast; GO:0009615 response to virus; GO:0009791 post-embryonic development; GO:0010494 cytoplasmic stress granule; GO:0010628 positive regulation of gene expression; GO:0010629 negative regulation of gene expression; GO:0016055 Wnt signaling pathway; GO:0016070 RNA metabolic process; GO:0017148 negative regulation of translation; GO:0030307 positive regulation of cell growth; GO:0030308 negative regulation of cell growth; GO:0030317 flagellated sperm motility; GO:0030422 siRNA processing; GO:0031047 regulatory ncRNA-mediated gene silencing; GO:0031053 primary miRNA processing; GO:0031333 negative regulation of protein-containing complex assembly; GO:0032481 positive regulation of type I interferon production; GO:0032727 positive regulation of interferon-alpha production; GO:0032728 positive regulation of interferon-beta production; GO:0034063 cytoplasmic stress granule assembly; GO:0034157 positive regulation of toll-like receptor 7 signaling pathway; GO:0034161 positive regulation of toll-like receptor 8 signaling pathway; GO:0034587 piRNA processing; GO:0035194 regulatory ncRNA-mediated post-transcriptional gene silencing; GO:0035556 intracellular signal transduction; GO:0036493 positive regulation of translation in response to endoplasmic reticulum stress; GO:0040019 positive regulation of embryonic development; GO:0042006 masculinization of hermaphroditic germ-line; GO:0042127 regulation of cell population proliferation; GO:0042256 cytosolic ribosome assembly; GO:0043065 positive regulation of apoptotic process; GO:0043066 negative regulation of apoptotic process; GO:0043330 response to exogenous dsRNA; GO:0044828 host-mediated suppression of viral genome replication; GO:0045070 positive regulation of viral genome replication; GO:0045087 innate immune response; GO:0045727 positive regulation of translation; GO:0045893 positive regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0045948 positive regulation of translational initiation; GO:0051445 regulation of meiotic cell cycle; GO:0055088 lipid homeostasis; GO:0070131 positive regulation of mitochondrial translation; GO:0071243 cellular response to arsenic-containing substance; GO:0071470 cellular response to osmotic stress; GO:0071651 positive regulation of chemokine (C-C motif) ligand 5 production; GO:0090263 positive regulation of canonical Wnt signaling pathway; GO:0097193 intrinsic apoptotic signaling pathway; GO:0097308 cellular response to farnesol; GO:0098586 cellular response to virus; GO:0141006 transposable element silencing by piRNA-mediated heterochromatin formation; GO:0141196 transposable element silencing by piRNA-mediated DNA methylation; GO:1900087 positive regulation of G1/S transition of mitotic cell cycle; GO:1900227 positive regulation of NLRP3 inflammasome complex assembly; GO:1901195 positive regulation of formation of translation preinitiation complex; GO:1901223 negative regulation of non-canonical NF-kappaB signal transduction; GO:1901224 positive regulation of non-canonical NF-kappaB signal transduction; GO:1902042 negative regulation of extrinsic apoptotic signaling pathway via death domain receptors; GO:1902523 positive regulation of protein K63-linked ubiquitination; GO:1903608 protein localization to cytoplasmic stress granule; GO:1905516 positive regulation of fertilization; GO:1990625 negative regulation of cytoplasmic translational initiation in response to stress; GO:2001243 negative regulation of intrinsic apoptotic signaling pathway
KEGG
EC: ec:5.6.2.7 | KO: K11594 | Pathway: 03040, 04622, 05161, 05203 | BRITE: 00001, 01000, 03019, 03036, 03041
Biological context

Connected feature records

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