Feature identity
- Identifier
- PaHa07g29620.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,317 bp
- Genomic location
- 7:78,271,967–78,279,053
- Strand
- −
Hass · mRNA
PaHa07g29620.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,317
- bp
- 7:78,271,967–78,279,053
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa07g29620
- eggNOG
- Preferred name: GTF2H2 | Seed ortholog: 337451.A0A3S4P5H3 | COG: S | eggNOG OG: C1_4@2759|A-1, Ssl1@2759|A-1
- Gene Ontology
- GO:0005515 protein binding; GO:0005634 nucleus; GO:0005675 transcription factor TFIIH holo complex; GO:0006289 nucleotide-excision repair; GO:0006357 regulation of transcription by RNA polymerase II; GO:0008270 zinc ion binding; GO:0016251 RNA polymerase II general transcription initiation factor activity; GO:0061630 ubiquitin protein ligase activity
- KEGG
- EC: ec:2.3.1.225, ec:3.1.3.16 | KO: K03142 | Pathway: 03022, 03420 | BRITE: 00001, 03021, 03400
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa07g29620.1-protein
derives_frommRNAPaHa07g29620.1
mRNAPaHa07g29620.1
part_ofgenePaHa07g29620
CDS
part_ofPaHa07g29620.1-CDS-7-1787993825:78271967..78272021mRNAPaHa07g29620.1
CDS
part_ofPaHa07g29620.1-CDS-7-1787993825:78272104..78272138mRNAPaHa07g29620.1
CDS
part_ofPaHa07g29620.1-CDS-7-1787993825:78272251..78272303mRNAPaHa07g29620.1
CDS
part_ofPaHa07g29620.1-CDS-7-1787993825:78276523..78276898mRNAPaHa07g29620.1
CDS
part_ofPaHa07g29620.1-CDS-7-1787993825:78276986..78277447mRNAPaHa07g29620.1
CDS
part_ofPaHa07g29620.1-CDS-7-1787993825:78278718..78279053mRNAPaHa07g29620.1
exon
part_ofPaHa07g29620.1-exon-7-1787993825:78271967..78272021mRNAPaHa07g29620.1
exon
part_ofPaHa07g29620.1-exon-7-1787993825:78272104..78272138mRNAPaHa07g29620.1
exon
part_ofPaHa07g29620.1-exon-7-1787993825:78272251..78272303mRNAPaHa07g29620.1
exon
part_ofPaHa07g29620.1-exon-7-1787993825:78276523..78276898mRNAPaHa07g29620.1
exon
part_ofPaHa07g29620.1-exon-7-1787993825:78276986..78277447mRNAPaHa07g29620.1
exon
part_ofPaHa07g29620.1-exon-7-1787993825:78278718..78279053mRNAPaHa07g29620.1
