Feature identity
- Identifier
- Pa01g4242.1
- Feature type
- mRNA
- Genome collection
- West Indian T2T
- Organism
- Persea americana-West Indian
- Sequence length
- 564 bp
- Genomic location
- Pa01:93,409,305–93,414,097
- Strand
- −
West Indian T2T · mRNA
Pa01g4242.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 564
- bp
- Pa01:93,409,305–93,414,097
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: Pa01g4242
- eggNOG
- Preferred name: LOC109113946 | Seed ortholog: 337451.A0A3S3N5U6 | COG: S | eggNOG OG: RRM_1@131567|Xz-19, RRM_1@2759|fE-20
- Gene Ontology
- GO:0000387 spliceosomal snRNP assembly; GO:0000388 spliceosome conformational change to release U4 (or U4atac) and U1 (or U11); GO:0000398 mRNA splicing, via spliceosome; GO:0001825 blastocyst formation; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006396 RNA processing; GO:0008150 biological_process; GO:0045292 mRNA cis splicing, via spliceosome; GO:1903241 U2-type prespliceosome assembly
- KEGG
- KO: K06910, K11090, K12833, K13126 | Pathway: 03015, 03018, 03040 | BRITE: 00001, 01002, 03019, 03041
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePa01g4242.1-protein
derives_frommRNAPa01g4242.1
mRNAPa01g4242.1
part_ofgenePa01g4242
exon
part_ofPa01g4242.1:1mRNAPa01g4242.1
exon
part_ofPa01g4242.1:2mRNAPa01g4242.1
CDS
part_ofPa01g4242.1:cdsmRNAPa01g4242.1
