West Indian T2T · mRNA

Pa01g1877.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,074
bp
Pa01:28,235,067–28,244,524
genomic location
Record overview

Feature identity

Identifier
Pa01g1877.1
Feature type
mRNA
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
1,074 bp
Genomic location
Pa01:28,235,067–28,244,524
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: AGD11 | Seed ortholog: 337451.A0A3S5WGJ7 | COG: S | eggNOG OG: ArfGap@131221|Di-9, ArfGap@131567|A-1*, ArfGap@2759|M-4, C2@131221|Hig-26, C2@131567|JB-10, C2@2759|UX-12!
Gene Ontology
GO:0000281 mitotic cytokinesis; GO:0001410 chlamydospore formation; GO:0001786 phosphatidylserine binding; GO:0003674 molecular_function; GO:0003723 RNA binding; GO:0004175 endopeptidase activity; GO:0004674 protein serine/threonine kinase activity; GO:0005096 GTPase activator activity; GO:0005509 calcium ion binding; GO:0005515 protein binding; GO:0005544 calcium-dependent phospholipid binding; GO:0005545 1-phosphatidylinositol binding; GO:0005546 phosphatidylinositol-4,5-bisphosphate binding; GO:0005547 phosphatidylinositol-3,4,5-trisphosphate binding; GO:0005575 cellular_component; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006508 proteolysis; GO:0006887 exocytosis; GO:0006897 endocytosis; GO:0006971 hypotonic response; GO:0007040 lysosome organization; GO:0007041 lysosomal transport; GO:0007166 cell surface receptor signaling pathway; GO:0007507 heart development; GO:0008150 biological_process; GO:0008289 lipid binding; GO:0008361 regulation of cell size; GO:0009267 cellular response to starvation; GO:0009617 response to bacterium; GO:0010628 positive regulation of gene expression; GO:0010629 negative regulation of gene expression; GO:0016079 synaptic vesicle exocytosis; GO:0019722 calcium-mediated signaling; GO:0030036 actin cytoskeleton organization; GO:0030335 positive regulation of cell migration; GO:0030336 negative regulation of cell migration; GO:0030435 sporulation resulting in formation of a cellular spore; GO:0030447 filamentous growth; GO:0030587 sorocarp development; GO:0030674 protein-macromolecule adaptor activity; GO:0030971 receptor tyrosine kinase binding; GO:0031138 negative regulation of conjugation with cellular fusion; GO:0031139 positive regulation of conjugation with cellular fusion; GO:0031149 sorocarp stalk cell differentiation; GO:0031154 culmination involved in sorocarp development; GO:0031157 regulation of aggregate size involved in sorocarp development; GO:0031589 cell-substrate adhesion; GO:0032880 regulation of protein localization; GO:0032956 regulation of actin cytoskeleton organization; GO:0033298 contractile vacuole organization; GO:0033660 symbiont-mediated suppression of host resistance gene-dependent defense response; GO:0034599 cellular response to oxidative stress; GO:0035176 social behavior; GO:0035556 intracellular signal transduction; GO:0036170 filamentous growth of a population of unicellular organisms in response to starvation; GO:0036171 filamentous growth of a population of unicellular organisms in response to chemical stimulus; GO:0036269 swimming behavior; GO:0038128 ERBB2 signaling pathway; GO:0038202 TORC1 signaling; GO:0042802 identical protein binding; GO:0043052 thermotaxis; GO:0043087 regulation of GTPase activity; GO:0043122 regulation of canonical NF-kappaB signal transduction; GO:0043325 phosphatidylinositol-3,4-bisphosphate binding; GO:0043495 protein-membrane adaptor activity; GO:0043533 inositol 1,3,4,5 tetrakisphosphate binding; GO:0043610 regulation of carbohydrate utilization; GO:0044114 development of symbiont in host; GO:0044182 filamentous growth of a population of unicellular organisms; GO:0044656 regulation of post-lysosomal vacuole size; GO:0045666 positive regulation of neuron differentiation; GO:0045806 negative regulation of endocytosis; GO:0045920 negative regulation of exocytosis; GO:0045943 positive regulation of transcription by RNA polymerase I; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0045945 positive regulation of transcription by RNA polymerase III; GO:0046474 glycerophospholipid biosynthetic process; GO:0046928 regulation of neurotransmitter secretion; GO:0046956 positive phototaxis; GO:0047484 regulation of response to osmotic stress; GO:0048168 regulation of neuronal synaptic plasticity; GO:0048306 calcium-dependent protein binding; GO:0048870 cell motility; GO:0051015 actin filament binding; GO:0051059 NF-kappaB binding; GO:0051489 regulation of filopodium assembly; GO:0051592 response to calcium ion; GO:0051897 positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction; GO:0055074 calcium ion homeostasis; GO:0060212 negative regulation of nuclear-transcribed mRNA poly(A) tail shortening; GO:0060359 response to ammonium ion; GO:0060963 positive regulation of ribosomal protein gene transcription by RNA polymerase II; GO:0061188 negative regulation of rDNA heterochromatin formation; GO:0070177 contractile vacuole discharge; GO:0070273 phosphatidylinositol-4-phosphate binding; GO:0071277 cellular response to calcium ion; GO:0071363 cellular response to growth factor stimulus; GO:0072665 protein localization to vacuole; GO:0090153 regulation of sphingolipid biosynthetic process; GO:0097120 receptor localization to synapse; GO:0098609 cell-cell adhesion; GO:0098974 postsynaptic actin cytoskeleton organization; GO:0106310 protein serine kinase activity; GO:0110034 negative regulation of adenylate cyclase-activating glucose-activated G protein-coupled receptor signaling pathway; GO:1900436 positive regulation of filamentous growth of a population of unicellular organisms in response to starvation; GO:1900438 negative regulation of filamentous growth of a population of unicellular organisms in response to chemical stimulus; GO:1901223 negative regulation of non-canonical NF-kappaB signal transduction; GO:1902883 negative regulation of response to oxidative stress; GO:1903265 positive regulation of tumor necrosis factor-mediated signaling pathway; GO:1903861 positive regulation of dendrite extension; GO:1903940 negative regulation of TORC2 signaling; GO:1904828 positive regulation of hydrogen sulfide biosynthetic process; GO:1990138 neuron projection extension; GO:2000282 regulation of amino acid biosynthetic process
KEGG
EC: ec:2.7.11.1 | KO: K12486 | Pathway: 04144 | BRITE: 00001, 04131
Biological context

Connected feature records

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