West Indian T2T · mRNA

Pa01g1658.2

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

750
bp
Pa01:24,611,069–24,619,099
genomic location
Record overview

Feature identity

Identifier
Pa01g1658.2
Feature type
mRNA
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
750 bp
Genomic location
Pa01:24,611,069–24,619,099
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: CBR1 | Seed ortholog: 337451.A0A3S4NNZ0 | COG: S | eggNOG OG: FAD_binding_6@1437183|IOW-31, FAD_binding_6@2759|Yk-15, NAD_binding_1@131567|d-5, NAD_binding_1@2759|iD-18!, NAD_binding_1@3398|Dnm-27
Gene Ontology
GO:0002098 tRNA wobble uridine modification; GO:0002926 tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation; GO:0003674 molecular_function; GO:0003954 NADH dehydrogenase activity; GO:0004128 cytochrome-b5 reductase activity, acting on NAD(P)H; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005741 mitochondrial outer membrane; GO:0005783 endoplasmic reticulum; GO:0005886 plasma membrane; GO:0006696 ergosterol biosynthetic process; GO:0008150 biological_process; GO:0009055 electron transfer activity; GO:0015031 protein transport; GO:0016156 fumarate reductase (NADH) activity; GO:0016653 oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor; GO:0017183 protein histidyl modification to diphthamide; GO:0020015 glycosome; GO:0020023 kinetoplast; GO:0036064 ciliary basal body; GO:0050660 flavin adenine dinucleotide binding; GO:0090524 cytochrome-b5 reductase activity, acting on NADH; GO:0090560 2-(3-amino-3-carboxypropyl)histidine synthase activity
KEGG
EC: ec:1.6.2.2 | KO: K00326 | Pathway: 00520 | Module: M00531 | BRITE: 00001, 01000
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.