West Indian T2T · mRNA

Pa01g1628.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

741
bp
Pa01:24,062,519–24,089,719
genomic location
Record overview

Feature identity

Identifier
Pa01g1628.1
Feature type
mRNA
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
741 bp
Genomic location
Pa01:24,062,519–24,089,719
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC110802691, TT2 | Seed ortholog: 29760.F6HGP4, 337451.A0A443NMA1 | COG: S | eggNOG OG: ELMO_CED12@131567|A-1*, ELMO_CED12@3193|AV-8, ELMO_CED12@33090|B-2!, Myb_DNA-binding@131567|AOS-27, Myb_DNA-binding@1437183|TMQ-50, Myb_DNA-binding@1437201|VsG-52, Myb_DNA-binding@33090|DqE-36, Myb_DNA-binding@3398|NyQ-46, Myb_DNA-binding@35493|JLv-42
Gene Ontology
GO:0000793 condensed chromosome; GO:0000976 transcription cis-regulatory region binding; GO:0001946 lymphangiogenesis; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0005741 mitochondrial outer membrane; GO:0005794 Golgi apparatus; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0005929 cilium; GO:0006355 regulation of DNA-templated transcription; GO:0006909 phagocytosis; GO:0006911 phagocytosis, engulfment; GO:0006915 apoptotic process; GO:0007010 cytoskeleton organization; GO:0007015 actin filament organization; GO:0007298 border follicle cell migration; GO:0007417 central nervous system development; GO:0007520 myoblast fusion; GO:0007605 sensory perception of sound; GO:0008104 intracellular protein localization; GO:0008150 biological_process; GO:0008285 negative regulation of cell population proliferation; GO:0008356 asymmetric cell division; GO:0009409 response to cold; GO:0009414 response to water deprivation; GO:0009555 pollen development; GO:0009615 response to virus; GO:0009620 response to fungus; GO:0009646 response to absence of light; GO:0009686 gibberellin biosynthetic process; GO:0009723 response to ethylene; GO:0009735 response to cytokinin; GO:0009737 response to abscisic acid; GO:0009739 response to gibberellin; GO:0009740 gibberellic acid mediated signaling pathway; GO:0009753 response to jasmonic acid; GO:0009789 positive regulation of abscisic acid-activated signaling pathway; GO:0009860 pollen tube growth; GO:0009867 jasmonic acid mediated signaling pathway; GO:0009944 polarity specification of adaxial/abaxial axis; GO:0009946 proximal/distal axis specification; GO:0009965 leaf morphogenesis; GO:0010015 root morphogenesis; GO:0010338 leaf formation; GO:0010373 negative regulation of gibberellin biosynthetic process; GO:0010467 gene expression; GO:0010468 regulation of gene expression; GO:0012501 programmed cell death; GO:0015031 protein transport; GO:0016020 membrane; GO:0016036 cellular response to phosphate starvation; GO:0016477 cell migration; GO:0016601 Rac protein signal transduction; GO:0030029 actin filament-based process; GO:0030036 actin cytoskeleton organization; GO:0030041 actin filament polymerization; GO:0030587 sorocarp development; GO:0030837 negative regulation of actin filament polymerization; GO:0030864 cortical actin cytoskeleton; GO:0031252 cell leading edge; GO:0031981 nuclear lumen; GO:0032045 guanyl-nucleotide exchange factor complex; GO:0032835 glomerulus development; GO:0032991 protein-containing complex; GO:0035082 axoneme assembly; GO:0035865 cellular response to potassium ion; GO:0036064 ciliary basal body; GO:0042593 glucose homeostasis; GO:0042742 defense response to bacterium; GO:0042802 identical protein binding; GO:0042803 protein homodimerization activity; GO:0043068 positive regulation of programmed cell death; GO:0043266 regulation of potassium ion transport; GO:0043327 chemotaxis to cAMP; GO:0043484 regulation of RNA splicing; GO:0043565 sequence-specific DNA binding; GO:0044354 macropinosome; GO:0044839 cell cycle G2/M phase transition; GO:0045088 regulation of innate immune response; GO:0045202 synapse; GO:0045766 positive regulation of angiogenesis; GO:0045892 negative regulation of DNA-templated transcription; GO:0045893 positive regulation of DNA-templated transcription; GO:0045926 negative regulation of growth; GO:0046330 positive regulation of JNK cascade; GO:0046529 imaginal disc fusion, thorax closure; GO:0048010 vascular endothelial growth factor receptor signaling pathway; GO:0048235 pollen sperm cell differentiation; GO:0048443 stamen development; GO:0048555 generative cell nucleus; GO:0048653 anther development; GO:0048655 anther wall tapetum morphogenesis; GO:0048870 cell motility; GO:0050688 regulation of defense response to virus; GO:0050764 regulation of phagocytosis; GO:0050832 defense response to fungus; GO:0051607 defense response to virus; GO:0055047 generative cell mitosis; GO:0055062 phosphate ion homeostasis; GO:0060117 auditory receptor cell development; GO:0060271 cilium assembly; GO:0060326 cell chemotaxis; GO:0080086 stamen filament development; GO:0080092 regulation of pollen tube growth; GO:0090406 pollen tube; GO:0098586 cellular response to virus; GO:0098794 postsynapse; GO:0098978 glutamatergic synapse; GO:0120045 stereocilium maintenance; GO:0120195 positive regulation of anther dehiscence; GO:0150052 regulation of postsynapse assembly; GO:0160175 somatic muscle attachment to chitin-based cuticle; GO:1901002 positive regulation of response to salt stress; GO:1901371 regulation of leaf morphogenesis; GO:1902074 response to salt; GO:1902584 positive regulation of response to water deprivation; GO:1903013 response to differentiation-inducing factor 1; GO:1905349 ciliary transition zone assembly; GO:1990019 protein storage vacuole organization; GO:1990841 promoter-specific chromatin binding; GO:2001212 regulation of vasculogenesis
KEGG
EC: ec:7.2.2.10 | KO: K09422, K23538 | Pathway: 04062, 04148, 05100, 05131, 05132, 05135 | BRITE: 00001, 03000, 03037, 04131
Biological context

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