Feature identity
- Identifier
- Pa01g0638.1
- Feature type
- mRNA
- Genome collection
- West Indian T2T
- Organism
- Persea americana-West Indian
- Sequence length
- 963 bp
- Genomic location
- Pa01:8,287,964–8,298,289
- Strand
- +
West Indian T2T · mRNA
Pa01g0638.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 963
- bp
- Pa01:8,287,964–8,298,289
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: Pa01g0638
- eggNOG
- Preferred name: LOC103706718 | Seed ortholog: 337451.A0A3S3MFI9 | COG: S | eggNOG OG: Myb_DNA-bind_4@131567|c-5, Myb_DNA-bind_4@2759|AT-7, Myb_DNA-bind_4@3193|wu-18, Myb_DNA-bind_4@35493|Px-14, Myb_DNA-bind_4@58023|AuT-22
- Gene Ontology
- GO:0003682 chromatin binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0006355 regulation of DNA-templated transcription; GO:0009738 abscisic acid-activated signaling pathway; GO:0009873 ethylene-activated signaling pathway; GO:0010468 regulation of gene expression; GO:0040029 epigenetic regulation of gene expression; GO:0042393 histone binding
- KEGG
- EC: ec:3.1.3.48 | KO: K18045 | Pathway: 05168 | BRITE: 00001, 01000, 01009
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePa01g0638.1-protein
derives_frommRNAPa01g0638.1
mRNAPa01g0638.1
part_ofgenePa01g0638
exon
part_ofPa01g0638.1:1mRNAPa01g0638.1
exon
part_ofPa01g0638.1:2mRNAPa01g0638.1
exon
part_ofPa01g0638.1:3mRNAPa01g0638.1
CDS
part_ofPa01g0638.1:cdsmRNAPa01g0638.1
