Feature identity
- Identifier
- PaHa08g00980.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,649 bp
- Genomic location
- 8:1,431,124–1,438,657
- Strand
- −
Hass · mRNA
PaHa08g00980.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,649
- bp
- 8:1,431,124–1,438,657
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa08g00980
- eggNOG
- Preferred name: LOC107808546 | Seed ortholog: 337451.A0A443P974 | COG: S | eggNOG OG: JmjC@131567|Ae-7, JmjC@2759|IC-12!, JmjC@33090|Xb-17, JmjC@58023|Adw-25, JmjN@131567|A-1*, JmjN@2759|U-5!, JmjN@33090|BQ-10, JmjN@3398|FO-14, zf-C5HC2@131567|A-1*, zf-C5HC2@2759|C-2!, zf-C5HC2@3398|Fx-13
- Gene Ontology
- GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009266 response to temperature stimulus; GO:0032452 histone demethylase activity; GO:0042393 histone binding; GO:0045814 negative regulation of gene expression, epigenetic; GO:0048571 long-day photoperiodism; GO:0048577 negative regulation of short-day photoperiodism, flowering; GO:0048579 negative regulation of long-day photoperiodism, flowering; GO:0071558 histone H3K27me2/H3K27me3 demethylase activity
- KEGG
- EC: ec:1.14.11.66, ec:1.14.11.67, ec:1.14.11.69 | KO: K06709, K11446, K11478 | Pathway: 03083, 04550 | BRITE: 00001, 01000, 01009, 03036
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa08g00980.1-protein
derives_frommRNAPaHa08g00980.1
mRNAPaHa08g00980.1
part_ofgenePaHa08g00980
CDS
part_ofPaHa08g00980.1-CDS-8-1787993825:1431124..1431570mRNAPaHa08g00980.1
CDS
part_ofPaHa08g00980.1-CDS-8-1787993825:1432459..1432695mRNAPaHa08g00980.1
CDS
part_ofPaHa08g00980.1-CDS-8-1787993825:1432824..1433215mRNAPaHa08g00980.1
CDS
part_ofPaHa08g00980.1-CDS-8-1787993825:1433338..1433733mRNAPaHa08g00980.1
CDS
part_ofPaHa08g00980.1-CDS-8-1787993825:1433896..1434173mRNAPaHa08g00980.1
CDS
part_ofPaHa08g00980.1-CDS-8-1787993825:1434345..1434424mRNAPaHa08g00980.1
CDS
part_ofPaHa08g00980.1-CDS-8-1787993825:1434531..1434584mRNAPaHa08g00980.1
CDS
part_ofPaHa08g00980.1-CDS-8-1787993825:1434843..1435062mRNAPaHa08g00980.1
CDS
part_ofPaHa08g00980.1-CDS-8-1787993825:1435172..1435328mRNAPaHa08g00980.1
CDS
part_ofPaHa08g00980.1-CDS-8-1787993825:1436713..1437097mRNAPaHa08g00980.1
CDS
part_ofPaHa08g00980.1-CDS-8-1787993825:1438655..1438657mRNAPaHa08g00980.1
exon
part_ofPaHa08g00980.1-exon-8-1787993825:1431124..1431570mRNAPaHa08g00980.1
exon
part_ofPaHa08g00980.1-exon-8-1787993825:1432459..1432695mRNAPaHa08g00980.1
exon
part_ofPaHa08g00980.1-exon-8-1787993825:1432824..1433215mRNAPaHa08g00980.1
exon
part_ofPaHa08g00980.1-exon-8-1787993825:1433338..1433733mRNAPaHa08g00980.1
exon
part_ofPaHa08g00980.1-exon-8-1787993825:1433896..1434173mRNAPaHa08g00980.1
exon
part_ofPaHa08g00980.1-exon-8-1787993825:1434345..1434424mRNAPaHa08g00980.1
exon
part_ofPaHa08g00980.1-exon-8-1787993825:1434531..1434584mRNAPaHa08g00980.1
exon
part_ofPaHa08g00980.1-exon-8-1787993825:1434843..1435062mRNAPaHa08g00980.1
exon
part_ofPaHa08g00980.1-exon-8-1787993825:1435172..1435328mRNAPaHa08g00980.1
exon
part_ofPaHa08g00980.1-exon-8-1787993825:1436713..1437097mRNAPaHa08g00980.1
exon
part_ofPaHa08g00980.1-exon-8-1787993825:1438655..1438657mRNAPaHa08g00980.1
