Feature identity
- Identifier
- Pa01g0554.2
- Feature type
- mRNA
- Genome collection
- West Indian T2T
- Organism
- Persea americana-West Indian
- Sequence length
- 1,305 bp
- Genomic location
- Pa01:7,147,651–7,163,930
- Strand
- −
West Indian T2T · mRNA
Pa01g0554.2
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,305
- bp
- Pa01:7,147,651–7,163,930
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: Pa01g0554
- eggNOG
- Preferred name: FAD3 | Seed ortholog: 337451.A0A443NJW5 | COG: COG3239 | eggNOG OG: DUF3474@131567|C-2, DUF3474@3398|FJ-12, FA_desaturase@131567|Bc-9, FA_desaturase@3398|DMZ-27!
- Gene Ontology
- GO:0005783 endoplasmic reticulum; GO:0006636 unsaturated fatty acid biosynthetic process; GO:0009507 chloroplast; GO:0042389 omega-3 fatty acid desaturase activity; GO:0102859 acyl-lipid omega-3 desaturase (cytochrome b5) activity
- KEGG
- EC: ec:1.14.19.13, ec:1.14.19.25, ec:1.14.19.35, ec:1.14.19.36 | KO: K10257, K21707 | BRITE: 00001, 01000, 01004
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePa01g0554.2-protein
derives_frommRNAPa01g0554.2
exon
part_ofPa01g0554.1:1mRNAPa01g0554.2
exon
part_ofPa01g0554.1:2mRNAPa01g0554.2
exon
part_ofPa01g0554.1:3mRNAPa01g0554.2
exon
part_ofPa01g0554.1:4mRNAPa01g0554.2
exon
part_ofPa01g0554.1:5mRNAPa01g0554.2
exon
part_ofPa01g0554.1:6mRNAPa01g0554.2
exon
part_ofPa01g0554.1:7mRNAPa01g0554.2
mRNAPa01g0554.2
part_ofgenePa01g0554
exon
part_ofPa01g0554.2:10mRNAPa01g0554.2
exon
part_ofPa01g0554.2:11mRNAPa01g0554.2
exon
part_ofPa01g0554.2:9mRNAPa01g0554.2
CDS
part_ofPa01g0554.2:cdsmRNAPa01g0554.2
