West Indian T2T · mRNA

Pa02g4886.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,179
bp
Pa02:101,486,549–101,493,503
genomic location
Record overview

Feature identity

Identifier
Pa02g4886.1
Feature type
mRNA
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
1,179 bp
Genomic location
Pa02:101,486,549–101,493,503
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC106773447 | Seed ortholog: 337451.A0A443N8Y2 | COG: S | eggNOG OG: RCC1@131567|t-6, RCC1@2759|cY-15
Gene Ontology
GO:0001750 photoreceptor outer segment; GO:0001895 retina homeostasis; GO:0005085 guanyl-nucleotide exchange factor activity; GO:0005515 protein binding; GO:0005737 cytoplasm; GO:0005794 Golgi apparatus; GO:0005813 centrosome; GO:0005929 cilium; GO:0007018 microtubule-based movement; GO:0007040 lysosome organization; GO:0007601 visual perception; GO:0008150 biological_process; GO:0010508 positive regulation of autophagy; GO:0010842 retina layer formation; GO:0019216 regulation of lipid metabolic process; GO:0032391 photoreceptor connecting cilium; GO:0036064 ciliary basal body; GO:0036126 sperm flagellum; GO:0042073 intraciliary transport; GO:0042462 eye photoreceptor cell development; GO:0046548 retinal rod cell development; GO:0060041 retina development in camera-type eye; GO:0060042 retina morphogenesis in camera-type eye; GO:0060271 cilium assembly; GO:0060287 epithelial cilium movement involved in determination of left/right asymmetry; GO:0071482 cellular response to light stimulus; GO:0097499 protein localization to non-motile cilium; GO:0120206 photoreceptor distal connecting cilium
KEGG
KO: K03099, K11493, K11494, K19607, K20167 | BRITE: 00001, 03019, 03036, 03037, 04131
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.