West Indian T2T · mRNA

Pa01g1311.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

639
bp
Pa01:18,389,058–18,399,039
genomic location
Record overview

Feature identity

Identifier
Pa01g1311.1
Feature type
mRNA
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
639 bp
Genomic location
Pa01:18,389,058–18,399,039
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC104601163, MYB1 | Seed ortholog: 337451.A0A3S3N277, 337451.A0A3S3Q642 | COG: S | eggNOG OG: Myb_DNA-binding@131567|AhB-29, RINGv@131567|A-1*, RINGv@2759|C-2!, RINGv@3193|FB-12, RINGv@3398|ec-19, RINGv@35493|BR-9
Gene Ontology
GO:0000209 protein polyubiquitination; GO:0000976 transcription cis-regulatory region binding; GO:0002495 antigen processing and presentation of peptide antigen via MHC class II; GO:0002643 regulation of tolerance induction; GO:0002753 cytoplasmic pattern recognition receptor signaling pathway; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0004842 ubiquitin-protein transferase activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006355 regulation of DNA-templated transcription; GO:0006513 protein monoubiquitination; GO:0006955 immune response; GO:0008150 biological_process; GO:0008270 zinc ion binding; GO:0008284 positive regulation of cell population proliferation; GO:0008299 isoprenoid biosynthetic process; GO:0009414 response to water deprivation; GO:0009555 pollen development; GO:0010025 wax biosynthetic process; GO:0010143 cutin biosynthetic process; GO:0010345 suberin biosynthetic process; GO:0010498 proteasomal protein catabolic process; GO:0016567 protein ubiquitination; GO:0016607 nuclear speck; GO:0019899 enzyme binding; GO:0030097 hemopoiesis; GO:0030970 retrograde protein transport, ER to cytosol; GO:0031624 ubiquitin conjugating enzyme binding; GO:0035264 multicellular organism growth; GO:0036503 ERAD pathway; GO:0039532 negative regulation of cytoplasmic pattern recognition receptor signaling pathway; GO:0042130 negative regulation of T cell proliferation; GO:0042287 MHC protein binding; GO:0042289 MHC class II protein binding; GO:0042335 cuticle development; GO:0043130 ubiquitin binding; GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process; GO:0043518 negative regulation of DNA damage response, signal transduction by p53 class mediator; GO:0044314 protein K27-linked ubiquitination; GO:0044546 NLRP3 inflammasome complex assembly; GO:0044790 suppression of viral release by host; GO:0045347 negative regulation of MHC class II biosynthetic process; GO:0045541 negative regulation of cholesterol biosynthetic process; GO:0050687 negative regulation of defense response to virus; GO:0050821 protein stabilization; GO:0051020 GTPase binding; GO:0051865 protein autoubiquitination; GO:0060026 convergent extension; GO:0060271 cilium assembly; GO:0061630 ubiquitin protein ligase activity; GO:0070534 protein K63-linked ubiquitination; GO:0070585 protein localization to mitochondrion; GO:0070936 protein K48-linked ubiquitination; GO:0071470 cellular response to osmotic stress; GO:0071472 cellular response to salt stress; GO:0090140 regulation of mitochondrial fission; GO:0090141 positive regulation of mitochondrial fission; GO:0097371 MDM2/MDM4 family protein binding; GO:0140367 antibacterial innate immune response; GO:0140374 antiviral innate immune response; GO:0140896 cGAS/STING signaling pathway; GO:0141111 positive regulation of cGAS/STING signaling pathway; GO:0180027 inner nuclear membrane-associated protein degradation pathway; GO:1900227 positive regulation of NLRP3 inflammasome complex assembly; GO:1900486 positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway; GO:1901799 negative regulation of proteasomal protein catabolic process; GO:1902018 negative regulation of cilium assembly; GO:1902166 negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator; GO:1902916 positive regulation of protein polyubiquitination; GO:1904380 endoplasmic reticulum mannose trimming; GO:1905167 positive regulation of lysosomal protein catabolic process; GO:1905524 negative regulation of protein autoubiquitination; GO:1990381 ubiquitin-specific protease binding
KEGG
EC: ec:1.2.1.11, ec:2.3.2.27 | KO: K09422, K15407 | Pathway: 00260, 00261, 00270, 00300, 01100, 01110, 01210, 01230, 04120, 04136, 04137, 04140, 04141 | Module: M00016, M00017, M00018, M00033, M00525, M00526, M00527 | BRITE: 00001, 03000, 03016
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.