PaHa01g26940.1

Record overview

Feature identity

Identifier: PaHa01g26940.1
Feature type: mRNA
Genome collection: Hass
Organism: Persea americana-Hass
Sequence length: 624 bp
Genomic location: 1:72,297,790–72,302,842
Strand: −

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: PaHa01g26940

eggNOG: Preferred name: TBP1 | Seed ortholog: 337451.A0A443NPE7 | COG: S | eggNOG OG: TBP@131567|A-1, TBP@2759|Hc-14, TBP@3398|vJ-30
Gene Ontology: GO:0000120 RNA polymerase I transcription regulator complex; GO:0000126 transcription factor TFIIIB complex; GO:0000785 chromatin; GO:0000791 euchromatin; GO:0001188 RNA polymerase I preinitiation complex assembly; GO:0001939 female pronucleus; GO:0001940 male pronucleus; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005667 transcription regulator complex; GO:0005668 RNA polymerase transcription factor SL1 complex; GO:0005669 transcription factor TFIID complex; GO:0005672 transcription factor TFIIA complex; GO:0005700 polytene chromosome; GO:0005737 cytoplasm; GO:0005783 endoplasmic reticulum; GO:0005829 cytosol; GO:0006351 DNA-templated transcription; GO:0006352 DNA-templated transcription initiation; GO:0006355 regulation of DNA-templated transcription; GO:0006361 transcription initiation at RNA polymerase I promoter; GO:0006366 transcription by RNA polymerase II; GO:0006367 transcription initiation at RNA polymerase II promoter; GO:0006383 transcription by RNA polymerase III; GO:0006384 transcription initiation at RNA polymerase III promoter; GO:0006402 mRNA catabolic process; GO:0007283 spermatogenesis; GO:0007369 gastrulation; GO:0009792 embryo development ending in birth or egg hatching; GO:0009880 embryonic pattern specification; GO:0030097 hemopoiesis; GO:0032991 protein-containing complex; GO:0042789 mRNA transcription by RNA polymerase II; GO:0042790 nucleolar large rRNA transcription by RNA polymerase I; GO:0042795 snRNA transcription by RNA polymerase II; GO:0042796 snRNA transcription by RNA polymerase III; GO:0042797 tRNA transcription by RNA polymerase III; GO:0045120 pronucleus; GO:0045892 negative regulation of DNA-templated transcription; GO:0045893 positive regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0045945 positive regulation of transcription by RNA polymerase III; GO:0051123 RNA polymerase II preinitiation complex assembly; GO:0060261 positive regulation of transcription initiation by RNA polymerase II; GO:0070898 RNA polymerase III preinitiation complex assembly; GO:0090575 RNA polymerase II transcription regulator complex
KEGG: KO: K03120 | Pathway: 03022, 05016, 05017, 05165, 05166, 05203 | BRITE: 00001, 03000, 03021

Feature identity

Functional evidence

Connected feature records