Hass · mRNA

PaHa03g06330.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,192
bp
3:12,276,770–12,300,277
genomic location
Record overview

Feature identity

Identifier
PaHa03g06330.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
3,192 bp
Genomic location
3:12,276,770–12,300,277
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: 11431608 | Seed ortholog: 337451.A0A3S3ML71 | COG: S | eggNOG OG: FAR1@131567|A-1*, FAR1@2759|DL-11, FAR1@3398|FG-13, Pyrid_oxidase_2@131567|A-1
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0003674 molecular_function; GO:0003714 transcription corepressor activity; GO:0005159 insulin-like growth factor receptor binding; GO:0005576 extracellular region; GO:0005667 transcription regulator complex; GO:0005764 lysosome; GO:0005768 endosome; GO:0005783 endoplasmic reticulum; GO:0005794 Golgi apparatus; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006897 endocytosis; GO:0006914 autophagy; GO:0007040 lysosome organization; GO:0007042 lysosomal lumen acidification; GO:0008150 biological_process; GO:0017025 TBP-class protein binding; GO:0035578 azurophil granule lumen; GO:0070062 extracellular exosome
KEGG
KO: K25476 | BRITE: 00001
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa03g06330.1-CDS-3-1787993825:12276770..12276945
part_of
CDSPaHa03g06330.1-CDS-3-1787993825:12281807..12281842
part_of
CDSPaHa03g06330.1-CDS-3-1787993825:12282089..12282290
part_of
CDSPaHa03g06330.1-CDS-3-1787993825:12283890..12283968
part_of
CDSPaHa03g06330.1-CDS-3-1787993825:12284099..12284216
part_of
CDSPaHa03g06330.1-CDS-3-1787993825:12284671..12284686
part_of
CDSPaHa03g06330.1-CDS-3-1787993825:12288640..12288697
part_of
CDSPaHa03g06330.1-CDS-3-1787993825:12289347..12291293
part_of
CDSPaHa03g06330.1-CDS-3-1787993825:12291446..12291539
part_of
CDSPaHa03g06330.1-CDS-3-1787993825:12293661..12293696
part_of
CDSPaHa03g06330.1-CDS-3-1787993825:12293989..12294190
part_of
CDSPaHa03g06330.1-CDS-3-1787993825:12299690..12299768
part_of
CDSPaHa03g06330.1-CDS-3-1787993825:12299895..12300012
part_of
CDSPaHa03g06330.1-CDS-3-1787993825:12300247..12300277
part_of
exonPaHa03g06330.1-exon-3-1787993825:12276770..12276945
part_of
exonPaHa03g06330.1-exon-3-1787993825:12281807..12281842
part_of
exonPaHa03g06330.1-exon-3-1787993825:12282089..12282290
part_of
exonPaHa03g06330.1-exon-3-1787993825:12283890..12283968
part_of
exonPaHa03g06330.1-exon-3-1787993825:12284099..12284216
part_of
exonPaHa03g06330.1-exon-3-1787993825:12284671..12284686
part_of
exonPaHa03g06330.1-exon-3-1787993825:12288640..12288697
part_of
exonPaHa03g06330.1-exon-3-1787993825:12289347..12291293
part_of
exonPaHa03g06330.1-exon-3-1787993825:12291446..12291539
part_of
exonPaHa03g06330.1-exon-3-1787993825:12293661..12293696
part_of
exonPaHa03g06330.1-exon-3-1787993825:12293989..12294190
part_of
exonPaHa03g06330.1-exon-3-1787993825:12299690..12299768
part_of
exonPaHa03g06330.1-exon-3-1787993825:12299895..12300012
part_of
exonPaHa03g06330.1-exon-3-1787993825:12300247..12300277
part_of