Anise · gene

Chr12.g83247

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

8,924
bp
Chr12:50,218,784–50,227,707
genomic location
Record overview

Feature identity

Identifier
Chr12.g83247
Feature type
gene
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
8,924 bp
Genomic location
Chr12:50,218,784–50,227,707
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
4432.XP_010245660.1,K,[Transcription factor]
Gene Ontology
Transcription factor | GO:0001101//response to acid chemical; GO:0006355//regulation of transcription, DNA-templated; GO:0006725//cellular aromatic compound metabolic process; GO:0006778//porphyrin-containing compound metabolic process; GO:0006779//porphyrin-containing compound biosynthetic process; GO:0006783//heme biosynthetic process; GO:0006807//nitrogen compound metabolic process; GO:0007154//cell communication; GO:0007165//signal transduction; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0009058//biosynthetic process; GO:0009314//response to radiation; GO:0009416//response to light stimulus; GO:0009605//response to external stimulus; GO:0009606//tropism; GO:0009628//response to abiotic stimulus; GO:0009629//response to gravity; GO:0009630//gravitropism; GO:0009639//response to red or far red light; GO:0009719//response to endogenous stimulus; GO:0009725//response to hormone; GO:0009739//response to gibberellin; GO:0009740//gibberellic acid mediated signaling pathway; GO:0009755//hormone-mediated signaling pathway; GO:0009889//regulation of biosynthetic process; GO:0009959//negative gravitropism; GO:0009987//cellular process; GO:0010017//red or far-red light signaling pathway; GO:0010029//regulation of seed germination; GO:0010033//response to organic substance; GO:0010099//regulation of photomorphogenesis; GO:0010100//negative regulation of photomorphogenesis; GO:0010114//response to red light; GO:0010161//red light signaling pathway; GO:0010187//negative regulation of seed germination; GO:0010468//regulation of gene expression; GO:0010476//gibberellin mediated signaling pathway; GO:0010556//regulation of macromolecule biosynthetic process; GO:0015994//chlorophyll metabolic process; GO:0015995//chlorophyll biosynthetic process; GO:0018130//heterocycle biosynthetic process; GO:0019219//regulation of nucleobase-containing compound metabolic process; GO:0019222//regulation of metabolic process; GO:0019438//aromatic compound biosynthetic process; GO:0023052//signaling; GO:0031323//regulation of cellular metabolic process; GO:0031326//regulation of cellular biosynthetic process; GO:0032870//cellular response to hormone stimulus; GO:0033013//tetrapyrrole metabolic process; GO:0033014//tetrapyrrole biosynthetic process; GO:0033993//response to lipid; GO:0034641//cellular nitrogen compound metabolic process; GO:0042168//heme metabolic process; GO:0042221//response to chemical; GO:0042440//pigment metabolic process; GO:0044237//cellular metabolic process; GO:0044249//cellular biosynthetic process; GO:0044271//cellular nitrogen compound biosynthetic process; GO:0046148//pigment biosynthetic process; GO:0046483//heterocycle metabolic process; GO:0048519//negative regulation of biological process; GO:0048580//regulation of post-embryonic development; GO:0048581//negative regulation of post-embryonic development; GO:0048583//regulation of response to stimulus; GO:0048585//negative regulation of response to stimulus; GO:0050789//regulation of biological process; GO:0050793//regulation of developmental process; GO:0050794//regulation of cellular process; GO:0050896//response to stimulus; GO:0051093//negative regulation of developmental process; GO:0051171//regulation of nitrogen compound metabolic process; GO:0051186//cofactor metabolic process; GO:0051188//cofactor biosynthetic process; GO:0051239//regulation of multicellular organismal process; GO:0051241//negative regulation of multicellular organismal process; GO:0051252//regulation of RNA metabolic process; GO:0051716//cellular response to stimulus; GO:0060255//regulation of macromolecule metabolic process; GO:0065007//biological regulation; GO:0070887//cellular response to chemical stimulus; GO:0071214//cellular response to abiotic stimulus; GO:0071229//cellular response to acid chemical; GO:0071310//cellular response to organic substance; GO:0071370//cellular response to gibberellin stimulus; GO:0071396//cellular response to lipid; GO:0071478//cellular response to radiation; GO:0071482//cellular response to light stimulus; GO:0071489//cellular response to red or far red light; GO:0071491//cellular response to red light; GO:0071495//cellular response to endogenous stimulus; GO:0071704//organic substance metabolic process; GO:0080090//regulation of primary metabolic process; GO:1900140//regulation of seedling development; GO:1901360//organic cyclic compound metabolic process; GO:1901362//organic cyclic compound biosynthetic process; GO:1901564//organonitrogen compound metabolic process; GO:1901566//organonitrogen compound biosynthetic process; GO:1901576//organic substance biosynthetic process; GO:1901700//response to oxygen-containing compound; GO:1901701//cellular response to oxygen-containing compound; GO:1903506//regulation of nucleic acid-templated transcription; GO:2000026//regulation of multicellular organismal development; GO:2000030//regulation of response to red or far red light; GO:2000112//regulation of cellular macromolecule biosynthetic process; GO:2001141//regulation of RNA biosynthetic process | GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0044424//intracellular part; GO:0044464//cell part | GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003677//DNA binding; GO:0003700//transcription factor activity, sequence-specific DNA binding; GO:0005488//binding; GO:0005515//protein binding; GO:0010313//phytochrome binding; GO:0042802//identical protein binding; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding
KEGG
K16189 | PIF4
NR
RWR96069.1 transcription factor PIF1-like protein isoform X3 [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
Q8GZM7.1 RecName: Full=Transcription factor PIF1; AltName: Full=Basic helix-loop-helix protein 15; Short=AtbHLH15; Short=bHLH 15; AltName: Full=Protein PHY-INTERACTING FACTOR 1; AltName: Full=Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5; AltName: Full=Transcription factor EN 101; AltName: Full=bHLH transcription factor bHLH015 [Arabidopsis thaliana]
Biological context

Connected feature records

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