Anise · gene

Chr12.g82601

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

8,395
bp
Chr12:42,544,330–42,552,724
genomic location
Record overview

Feature identity

Identifier
Chr12.g82601
Feature type
gene
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
8,395 bp
Genomic location
Chr12:42,544,330–42,552,724
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
29760.VIT_10s0003g00420.t01,K,[Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)]
Gene Ontology
Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) | GO:0000003//reproduction; GO:0001708//cell fate specification; GO:0003006//developmental process involved in reproduction; GO:0006355//regulation of transcription, DNA-templated; GO:0007275//multicellular organism development; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0009719//response to endogenous stimulus; GO:0009725//response to hormone; GO:0009733//response to auxin; GO:0009791//post-embryonic development; GO:0009850//auxin metabolic process; GO:0009888//tissue development; GO:0009889//regulation of biosynthetic process; GO:0009908//flower development; GO:0009987//cellular process; GO:0010022//meristem determinacy; GO:0010033//response to organic substance; GO:0010050//vegetative phase change; GO:0010073//meristem maintenance; GO:0010158//abaxial cell fate specification; GO:0010468//regulation of gene expression; GO:0010556//regulation of macromolecule biosynthetic process; GO:0010582//floral meristem determinacy; GO:0010817//regulation of hormone levels; GO:0019219//regulation of nucleobase-containing compound metabolic process; GO:0019222//regulation of metabolic process; GO:0022414//reproductive process; GO:0030154//cell differentiation; GO:0031323//regulation of cellular metabolic process; GO:0031326//regulation of cellular biosynthetic process; GO:0032501//multicellular organismal process; GO:0032502//developmental process; GO:0042221//response to chemical; GO:0042445//hormone metabolic process; GO:0044237//cellular metabolic process; GO:0045165//cell fate commitment; GO:0048367//shoot system development; GO:0048507//meristem development; GO:0048608//reproductive structure development; GO:0048731//system development; GO:0048856//anatomical structure development; GO:0048869//cellular developmental process; GO:0050789//regulation of biological process; GO:0050794//regulation of cellular process; GO:0050896//response to stimulus; GO:0051171//regulation of nitrogen compound metabolic process; GO:0051252//regulation of RNA metabolic process; GO:0060255//regulation of macromolecule metabolic process; GO:0061458//reproductive system development; GO:0065007//biological regulation; GO:0065008//regulation of biological quality; GO:0080090//regulation of primary metabolic process; GO:0090567//reproductive shoot system development; GO:1903506//regulation of nucleic acid-templated transcription; GO:2000112//regulation of cellular macromolecule biosynthetic process; GO:2001141//regulation of RNA biosynthetic process | GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0044424//intracellular part; GO:0044464//cell part | GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003677//DNA binding; GO:0003700//transcription factor activity, sequence-specific DNA binding; GO:0005488//binding; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding
KEGG
K14486 | K14486, ARF
NR
RWR96401.1 auxin response factor 3 [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
Q8S985.1 RecName: Full=Auxin response factor 15; AltName: Full=ETTIN-like protein 1; AltName: Full=OsETTIN1 [Oryza sativa Japonica Group]
Biological context

Connected feature records

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