Anise · gene

Chr12.g83219

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

23,410
bp
Chr12:49,780,447–49,803,856
genomic location
Record overview

Feature identity

Identifier
Chr12.g83219
Feature type
gene
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
23,410 bp
Genomic location
Chr12:49,780,447–49,803,856
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
29760.VIT_19s0014g01500.t01,S,[Acyl-CoA N-acyltransferase with RING FYVE PHD-type zinc finger protein]
Gene Ontology
Acyl-CoA N-acyltransferase with RING FYVE PHD-type zinc finger protein | GO:0000122//negative regulation of transcription from RNA polymerase II promoter; GO:0006139//nucleobase-containing compound metabolic process; GO:0006259//DNA metabolic process; GO:0006304//DNA modification; GO:0006305//DNA alkylation; GO:0006306//DNA methylation; GO:0006325//chromatin organization; GO:0006355//regulation of transcription, DNA-templated; GO:0006357//regulation of transcription from RNA polymerase II promoter; GO:0006464//cellular protein modification process; GO:0006473//protein acetylation; GO:0006475//internal protein amino acid acetylation; GO:0006725//cellular aromatic compound metabolic process; GO:0006807//nitrogen compound metabolic process; GO:0006996//organelle organization; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0009889//regulation of biosynthetic process; GO:0009890//negative regulation of biosynthetic process; GO:0009892//negative regulation of metabolic process; GO:0009987//cellular process; GO:0010468//regulation of gene expression; GO:0010556//regulation of macromolecule biosynthetic process; GO:0010558//negative regulation of macromolecule biosynthetic process; GO:0010605//negative regulation of macromolecule metabolic process; GO:0010629//negative regulation of gene expression; GO:0016043//cellular component organization; GO:0016070//RNA metabolic process; GO:0016458//gene silencing; GO:0016569//covalent chromatin modification; GO:0016570//histone modification; GO:0016573//histone acetylation; GO:0018193//peptidyl-amino acid modification; GO:0018205//peptidyl-lysine modification; GO:0018393//internal peptidyl-lysine acetylation; GO:0018394//peptidyl-lysine acetylation; GO:0019219//regulation of nucleobase-containing compound metabolic process; GO:0019222//regulation of metabolic process; GO:0019538//protein metabolic process; GO:0031047//gene silencing by RNA; GO:0031323//regulation of cellular metabolic process; GO:0031324//negative regulation of cellular metabolic process; GO:0031326//regulation of cellular biosynthetic process; GO:0031327//negative regulation of cellular biosynthetic process; GO:0032259//methylation; GO:0034641//cellular nitrogen compound metabolic process; GO:0036211//protein modification process; GO:0043170//macromolecule metabolic process; GO:0043412//macromolecule modification; GO:0043414//macromolecule methylation; GO:0043543//protein acylation; GO:0043966//histone H3 acetylation; GO:0043971//histone H3-K18 acetylation; GO:0043972//histone H3-K23 acetylation; GO:0044030//regulation of DNA methylation; GO:0044154//histone H3-K14 acetylation; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0044260//cellular macromolecule metabolic process; GO:0044267//cellular protein metabolic process; GO:0044728//DNA methylation or demethylation; GO:0045892//negative regulation of transcription, DNA-templated; GO:0045934//negative regulation of nucleobase-containing compound metabolic process; GO:0046483//heterocycle metabolic process; GO:0048519//negative regulation of biological process; GO:0048523//negative regulation of cellular process; GO:0050789//regulation of biological process; GO:0050794//regulation of cellular process; GO:0050808//synapse organization; GO:0051052//regulation of DNA metabolic process; GO:0051171//regulation of nitrogen compound metabolic process; GO:0051172//negative regulation of nitrogen compound metabolic process; GO:0051252//regulation of RNA metabolic process; GO:0051253//negative regulation of RNA metabolic process; GO:0051276//chromosome organization; GO:0060255//regulation of macromolecule metabolic process; GO:0065007//biological regulation; GO:0071704//organic substance metabolic process; GO:0071840//cellular component organization or biogenesis; GO:0072553//terminal button organization; GO:0080090//regulation of primary metabolic process; GO:0080188//RNA-directed DNA methylation; GO:0090304//nucleic acid metabolic process; GO:1901360//organic cyclic compound metabolic process; GO:1901564//organonitrogen compound metabolic process; GO:1902679//negative regulation of RNA biosynthetic process; GO:1903506//regulation of nucleic acid-templated transcription; GO:1903507//negative regulation of nucleic acid-templated transcription; GO:2000112//regulation of cellular macromolecule biosynthetic process; GO:2000113//negative regulation of cellular macromolecule biosynthetic process; GO:2001141//regulation of RNA biosynthetic process | GO:0000118//histone deacetylase complex; GO:0000228//nuclear chromosome; GO:0000785//chromatin; GO:0000790//nuclear chromatin; GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0005654//nucleoplasm; GO:0005694//chromosome; GO:0005737//cytoplasm; GO:0005813//centrosome; GO:0005815//microtubule organizing center; GO:0005856//cytoskeleton; GO:0005911//cell-cell junction; GO:0009506//plasmodesma; GO:0015630//microtubule cytoskeleton; GO:0016581//NuRD complex; GO:0017053//transcriptional repressor complex; GO:0030054//cell junction; GO:0031974//membrane-enclosed lumen; GO:0031981//nuclear lumen; GO:0032991//macromolecular complex; GO:0032993//protein-DNA complex; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043228//non-membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0043232//intracellular non-membrane-bounded organelle; GO:0043233//organelle lumen; GO:0044422//organelle part; GO:0044424//intracellular part; GO:0044427//chromosomal part; GO:0044428//nuclear part; GO:0044430//cytoskeletal part; GO:0044446//intracellular organelle part; GO:0044451//nucleoplasm part; GO:0044454//nuclear chromosome part; GO:0044464//cell part; GO:0055044//symplast; GO:0070013//intracellular organelle lumen; GO:0070603//SWI/SNF superfamily-type complex; GO:0090545//CHD-type complex; GO:0090568//nuclear transcriptional repressor complex; GO:1902494//catalytic complex; GO:1904949//ATPase complex | GO:0001085//RNA polymerase II transcription factor binding; GO:0001103//RNA polymerase II repressing transcription factor binding; GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003677//DNA binding; GO:0003690//double-stranded DNA binding; GO:0003824//catalytic activity; GO:0004402//histone acetyltransferase activity; GO:0005488//binding; GO:0005515//protein binding; GO:0008080//N-acetyltransferase activity; GO:0008134//transcription factor binding; GO:0010385//double-stranded methylated DNA binding; GO:0016407//acetyltransferase activity; GO:0016410//N-acyltransferase activity; GO:0016740//transferase activity; GO:0016746//transferase activity, transferring acyl groups; GO:0016747//transferase activity, transferring acyl groups other than amino-acyl groups; GO:0019899//enzyme binding; GO:0034212//peptide N-acetyltransferase activity; GO:0042393//histone binding; GO:0042826//histone deacetylase binding; GO:0061733//peptide-lysine-N-acetyltransferase activity; GO:0070491//repressing transcription factor binding; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding
NR
RWR96093.1 GNAT domain-containing protein [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
F4IXE7.1 RecName: Full=Increased DNA methylation 1; AltName: Full=Histone H3 acetyltransferase IDM1; AltName: Full=Protein ROS4; AltName: Full=Repressor of silencing 4 [Arabidopsis thaliana]
Biological context

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