Anise · gene

Chr11.g74286

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

36,626
bp
Chr11:13,905,620–13,942,245
genomic location
Record overview

Feature identity

Identifier
Chr11.g74286
Feature type
gene
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
36,626 bp
Genomic location
Chr11:13,905,620–13,942,245
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
4432.XP_010256794.1,K,[Transcription initiation factor TFIID subunit]
Gene Ontology
Transcription initiation factor TFIID subunit | GO:0001101//response to acid chemical; GO:0006139//nucleobase-containing compound metabolic process; GO:0006325//chromatin organization; GO:0006351//transcription, DNA-templated; GO:0006352//DNA-templated transcription, initiation; GO:0006355//regulation of transcription, DNA-templated; GO:0006366//transcription from RNA polymerase II promoter; GO:0006367//transcription initiation from RNA polymerase II promoter; GO:0006464//cellular protein modification process; GO:0006473//protein acetylation; GO:0006475//internal protein amino acid acetylation; GO:0006725//cellular aromatic compound metabolic process; GO:0006807//nitrogen compound metabolic process; GO:0006996//organelle organization; GO:0007154//cell communication; GO:0007165//signal transduction; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0009058//biosynthetic process; GO:0009059//macromolecule biosynthetic process; GO:0009719//response to endogenous stimulus; GO:0009725//response to hormone; GO:0009735//response to cytokinin; GO:0009736//cytokinin-activated signaling pathway; GO:0009753//response to jasmonic acid; GO:0009755//hormone-mediated signaling pathway; GO:0009867//jasmonic acid mediated signaling pathway; GO:0009889//regulation of biosynthetic process; GO:0009891//positive regulation of biosynthetic process; GO:0009893//positive regulation of metabolic process; GO:0009966//regulation of signal transduction; GO:0009987//cellular process; GO:0010033//response to organic substance; GO:0010104//regulation of ethylene-activated signaling pathway; GO:0010467//gene expression; GO:0010468//regulation of gene expression; GO:0010556//regulation of macromolecule biosynthetic process; GO:0010557//positive regulation of macromolecule biosynthetic process; GO:0010604//positive regulation of macromolecule metabolic process; GO:0010646//regulation of cell communication; GO:0016043//cellular component organization; GO:0016070//RNA metabolic process; GO:0016569//covalent chromatin modification; GO:0016570//histone modification; GO:0016573//histone acetylation; GO:0018130//heterocycle biosynthetic process; GO:0018193//peptidyl-amino acid modification; GO:0018205//peptidyl-lysine modification; GO:0018393//internal peptidyl-lysine acetylation; GO:0018394//peptidyl-lysine acetylation; GO:0019219//regulation of nucleobase-containing compound metabolic process; GO:0019222//regulation of metabolic process; GO:0019438//aromatic compound biosynthetic process; GO:0019538//protein metabolic process; GO:0022607//cellular component assembly; GO:0023051//regulation of signaling; GO:0023052//signaling; GO:0031323//regulation of cellular metabolic process; GO:0031325//positive regulation of cellular metabolic process; GO:0031326//regulation of cellular biosynthetic process; GO:0031328//positive regulation of cellular biosynthetic process; GO:0032774//RNA biosynthetic process; GO:0032870//cellular response to hormone stimulus; GO:0034622//cellular macromolecular complex assembly; GO:0034641//cellular nitrogen compound metabolic process; GO:0034645//cellular macromolecule biosynthetic process; GO:0034654//nucleobase-containing compound biosynthetic process; GO:0036211//protein modification process; GO:0042221//response to chemical; GO:0043170//macromolecule metabolic process; GO:0043412//macromolecule modification; GO:0043543//protein acylation; GO:0043933//macromolecular complex subunit organization; GO:0043966//histone H3 acetylation; GO:0044085//cellular component biogenesis; GO:0044093//positive regulation of molecular function; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0044249//cellular biosynthetic process; GO:0044260//cellular macromolecule metabolic process; GO:0044267//cellular protein metabolic process; GO:0044271//cellular nitrogen compound biosynthetic process; GO:0045935//positive regulation of nucleobase-containing compound metabolic process; GO:0046483//heterocycle metabolic process; GO:0048518//positive regulation of biological process; GO:0048522//positive regulation of cellular process; GO:0048583//regulation of response to stimulus; GO:0050789//regulation of biological process; GO:0050794//regulation of cellular process; GO:0050896//response to stimulus; GO:0051090//regulation of sequence-specific DNA binding transcription factor activity; GO:0051091//positive regulation of sequence-specific DNA binding transcription factor activity; GO:0051123//RNA polymerase II transcriptional preinitiation complex assembly; GO:0051171//regulation of nitrogen compound metabolic process; GO:0051173//positive regulation of nitrogen compound metabolic process; GO:0051252//regulation of RNA metabolic process; GO:0051254//positive regulation of RNA metabolic process; GO:0051276//chromosome organization; GO:0051716//cellular response to stimulus; GO:0060255//regulation of macromolecule metabolic process; GO:0065003//macromolecular complex assembly; GO:0065004//protein-DNA complex assembly; GO:0065007//biological regulation; GO:0065009//regulation of molecular function; GO:0070297//regulation of phosphorelay signal transduction system; GO:0070887//cellular response to chemical stimulus; GO:0070897//DNA-templated transcriptional preinitiation complex assembly; GO:0071229//cellular response to acid chemical; GO:0071310//cellular response to organic substance; GO:0071368//cellular response to cytokinin stimulus; GO:0071395//cellular response to jasmonic acid stimulus; GO:0071495//cellular response to endogenous stimulus; GO:0071704//organic substance metabolic process; GO:0071824//protein-DNA complex subunit organization; GO:0071840//cellular component organization or biogenesis; GO:0080090//regulation of primary metabolic process; GO:0090304//nucleic acid metabolic process; GO:0097659//nucleic acid-templated transcription; GO:1901360//organic cyclic compound metabolic process; GO:1901362//organic cyclic compound biosynthetic process; GO:1901564//organonitrogen compound metabolic process; GO:1901576//organic substance biosynthetic process; GO:1901700//response to oxygen-containing compound; GO:1901701//cellular response to oxygen-containing compound; GO:1902531//regulation of intracellular signal transduction; GO:1902680//positive regulation of RNA biosynthetic process; GO:1903506//regulation of nucleic acid-templated transcription; GO:1903508//positive regulation of nucleic acid-templated transcription; GO:2000112//regulation of cellular macromolecule biosynthetic process; GO:2001141//regulation of RNA biosynthetic process | GO:0000123//histone acetyltransferase complex; GO:0000124//SAGA complex; GO:0000125//PCAF complex; GO:0000428//DNA-directed RNA polymerase complex; GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0005654//nucleoplasm; GO:0005667//transcription factor complex; GO:0005669//transcription factor TFIID complex; GO:0016591//DNA-directed RNA polymerase II, holoenzyme; GO:0030880//RNA polymerase complex; GO:0030914//STAGA complex; GO:0031248//protein acetyltransferase complex; GO:0031974//membrane-enclosed lumen; GO:0031981//nuclear lumen; GO:0032991//macromolecular complex; GO:0033276//transcription factor TFTC complex; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0043233//organelle lumen; GO:0044422//organelle part; GO:0044424//intracellular part; GO:0044428//nuclear part; GO:0044446//intracellular organelle part; GO:0044451//nucleoplasm part; GO:0044464//cell part; GO:0044798//nuclear transcription factor complex; GO:0055029//nuclear DNA-directed RNA polymerase complex; GO:0061695//transferase complex, transferring phosphorus-containing groups; GO:0070013//intracellular organelle lumen; GO:0070461//SAGA-type complex; GO:0090575//RNA polymerase II transcription factor complex; GO:1902493//acetyltransferase complex; GO:1902494//catalytic complex; GO:1905368//peptidase complex; GO:1990234//transferase complex | GO:0001085//RNA polymerase II transcription factor binding; GO:0001102//RNA polymerase II activating transcription factor binding; GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003677//DNA binding; GO:0003712//transcription cofactor activity; GO:0003713//transcription coactivator activity; GO:0005488//binding; GO:0005515//protein binding; GO:0008134//transcription factor binding; GO:0017025//TBP-class protein binding; GO:0033613//activating transcription factor binding; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding
KEGG
K03126 | TAF12
NR
RWR92017.1 transcription initiation factor TFIID subunit 12b-like protein isoform X2 [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
B2C6R6.1 RecName: Full=Transcription initiation factor TFIID subunit 12b; AltName: Full=Protein CYTOKININ-HYPERSENSITIVE 1; AltName: Full=Protein ENHANCED ETHYLENE RESPONSE 4; AltName: Full=TBP-associated factor 12b; Short=AtTAF12b [Arabidopsis thaliana]
Biological context

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