Anise · gene

Chr09.g67955

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

12,242
bp
Chr09:43,574,786–43,587,027
genomic location
Record overview

Feature identity

Identifier
Chr09.g67955
Feature type
gene
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
12,242 bp
Genomic location
Chr09:43,574,786–43,587,027
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
4432.XP_010253593.1,K,[SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains]
Gene Ontology
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains | GO:0000122//negative regulation of transcription from RNA polymerase II promoter; GO:0000226//microtubule cytoskeleton organization; GO:0001932//regulation of protein phosphorylation; GO:0001933//negative regulation of protein phosphorylation; GO:0006109//regulation of carbohydrate metabolic process; GO:0006110//regulation of glycolytic process; GO:0006139//nucleobase-containing compound metabolic process; GO:0006140//regulation of nucleotide metabolic process; GO:0006351//transcription, DNA-templated; GO:0006355//regulation of transcription, DNA-templated; GO:0006357//regulation of transcription from RNA polymerase II promoter; GO:0006366//transcription from RNA polymerase II promoter; GO:0006725//cellular aromatic compound metabolic process; GO:0006807//nitrogen compound metabolic process; GO:0006996//organelle organization; GO:0007010//cytoskeleton organization; GO:0007017//microtubule-based process; GO:0007049//cell cycle; GO:0007051//spindle organization; GO:0007623//circadian rhythm; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0009058//biosynthetic process; GO:0009059//macromolecule biosynthetic process; GO:0009889//regulation of biosynthetic process; GO:0009890//negative regulation of biosynthetic process; GO:0009892//negative regulation of metabolic process; GO:0009893//positive regulation of metabolic process; GO:0009894//regulation of catabolic process; GO:0009966//regulation of signal transduction; GO:0009968//negative regulation of signal transduction; GO:0009987//cellular process; GO:0010467//gene expression; GO:0010468//regulation of gene expression; GO:0010556//regulation of macromolecule biosynthetic process; GO:0010558//negative regulation of macromolecule biosynthetic process; GO:0010563//negative regulation of phosphorus metabolic process; GO:0010604//positive regulation of macromolecule metabolic process; GO:0010605//negative regulation of macromolecule metabolic process; GO:0010628//positive regulation of gene expression; GO:0010629//negative regulation of gene expression; GO:0010646//regulation of cell communication; GO:0010648//negative regulation of cell communication; GO:0016043//cellular component organization; GO:0016070//RNA metabolic process; GO:0018130//heterocycle biosynthetic process; GO:0019216//regulation of lipid metabolic process; GO:0019219//regulation of nucleobase-containing compound metabolic process; GO:0019220//regulation of phosphate metabolic process; GO:0019222//regulation of metabolic process; GO:0019438//aromatic compound biosynthetic process; GO:0022402//cell cycle process; GO:0022607//cellular component assembly; GO:0023051//regulation of signaling; GO:0023057//negative regulation of signaling; GO:0030808//regulation of nucleotide biosynthetic process; GO:0030811//regulation of nucleotide catabolic process; GO:0031323//regulation of cellular metabolic process; GO:0031324//negative regulation of cellular metabolic process; GO:0031326//regulation of cellular biosynthetic process; GO:0031327//negative regulation of cellular biosynthetic process; GO:0031329//regulation of cellular catabolic process; GO:0031399//regulation of protein modification process; GO:0031400//negative regulation of protein modification process; GO:0032268//regulation of cellular protein metabolic process; GO:0032269//negative regulation of cellular protein metabolic process; GO:0032368//regulation of lipid transport; GO:0032774//RNA biosynthetic process; GO:0032872//regulation of stress-activated MAPK cascade; GO:0032873//negative regulation of stress-activated MAPK cascade; GO:0032879//regulation of localization; GO:0032890//regulation of organic acid transport; GO:0034641//cellular nitrogen compound metabolic process; GO:0034645//cellular macromolecule biosynthetic process; GO:0034654//nucleobase-containing compound biosynthetic process; GO:0042325//regulation of phosphorylation; GO:0042326//negative regulation of phosphorylation; GO:0043170//macromolecule metabolic process; GO:0043269//regulation of ion transport; GO:0043408//regulation of MAPK cascade; GO:0043409//negative regulation of MAPK cascade; GO:0043467//regulation of generation of precursor metabolites and energy; GO:0043470//regulation of carbohydrate catabolic process; GO:0044070//regulation of anion transport; GO:0044085//cellular component biogenesis; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0044249//cellular biosynthetic process; GO:0044260//cellular macromolecule metabolic process; GO:0044271//cellular nitrogen compound biosynthetic process; GO:0045892//negative regulation of transcription, DNA-templated; GO:0045934//negative regulation of nucleobase-containing compound metabolic process; GO:0045936//negative regulation of phosphate metabolic process; GO:0046328//regulation of JNK cascade; GO:0046329//negative regulation of JNK cascade; GO:0046483//heterocycle metabolic process; GO:0048511//rhythmic process; GO:0048518//positive regulation of biological process; GO:0048519//negative regulation of biological process; GO:0048523//negative regulation of cellular process; GO:0048583//regulation of response to stimulus; GO:0048585//negative regulation of response to stimulus; GO:0050789//regulation of biological process; GO:0050794//regulation of cellular process; GO:0051049//regulation of transport; GO:0051171//regulation of nitrogen compound metabolic process; GO:0051172//negative regulation of nitrogen compound metabolic process; GO:0051174//regulation of phosphorus metabolic process; GO:0051193//regulation of cofactor metabolic process; GO:0051196//regulation of coenzyme metabolic process; GO:0051225//spindle assembly; GO:0051246//regulation of protein metabolic process; GO:0051248//negative regulation of protein metabolic process; GO:0051252//regulation of RNA metabolic process; GO:0051253//negative regulation of RNA metabolic process; GO:0060147//regulation of posttranscriptional gene silencing; GO:0060149//negative regulation of posttranscriptional gene silencing; GO:0060255//regulation of macromolecule metabolic process; GO:0060964//regulation of gene silencing by miRNA; GO:0060965//negative regulation of gene silencing by miRNA; GO:0060966//regulation of gene silencing by RNA; GO:0060967//negative regulation of gene silencing by RNA; GO:0060968//regulation of gene silencing; GO:0060969//negative regulation of gene silencing; GO:0065007//biological regulation; GO:0070302//regulation of stress-activated protein kinase signaling cascade; GO:0070303//negative regulation of stress-activated protein kinase signaling cascade; GO:0070920//regulation of production of small RNA involved in gene silencing by RNA; GO:0070925//organelle assembly; GO:0071704//organic substance metabolic process; GO:0071840//cellular component organization or biogenesis; GO:0072361//regulation of glycolytic process by regulation of transcription from RNA polymerase II promoter; GO:0072362//regulation of glycolytic process by negative regulation of transcription from RNA polymerase II promoter; GO:0072367//regulation of lipid transport by regulation of transcription from RNA polymerase II promoter; GO:0072368//regulation of lipid transport by negative regulation of transcription from RNA polymerase II promoter; GO:0080090//regulation of primary metabolic process; GO:0080134//regulation of response to stress; GO:0080135//regulation of cellular response to stress; GO:0090304//nucleic acid metabolic process; GO:0097659//nucleic acid-templated transcription; GO:0098679//regulation of carbohydrate catabolic process by regulation of transcription from RNA polymerase II promoter; GO:1900371//regulation of purine nucleotide biosynthetic process; GO:1900402//regulation of carbohydrate metabolic process by regulation of transcription from RNA polymerase II promoter; GO:1900542//regulation of purine nucleotide metabolic process; GO:1901360//organic cyclic compound metabolic process; GO:1901362//organic cyclic compound biosynthetic process; GO:1901576//organic substance biosynthetic process; GO:1902531//regulation of intracellular signal transduction; GO:1902532//negative regulation of intracellular signal transduction; GO:1902679//negative regulation of RNA biosynthetic process; GO:1903506//regulation of nucleic acid-templated transcription; GO:1903507//negative regulation of nucleic acid-templated transcription; GO:1903578//regulation of ATP metabolic process; GO:1903798//regulation of production of miRNAs involved in gene silencing by miRNA; GO:1903799//negative regulation of production of miRNAs involved in gene silencing by miRNA; GO:1905952//regulation of lipid localization; GO:2000112//regulation of cellular macromolecule biosynthetic process; GO:2000113//negative regulation of cellular macromolecule biosynthetic process; GO:2000191//regulation of fatty acid transport; GO:2001141//regulation of RNA biosynthetic process; GO:2001169//regulation of ATP biosynthetic process | GO:0000228//nuclear chromosome; GO:0000785//chromatin; GO:0000790//nuclear chromatin; GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0005654//nucleoplasm; GO:0005694//chromosome; GO:0005737//cytoplasm; GO:0005819//spindle; GO:0005829//cytosol; GO:0005856//cytoskeleton; GO:0005874//microtubule; GO:0005876//spindle microtubule; GO:0015630//microtubule cytoskeleton; GO:0017053//transcriptional repressor complex; GO:0031974//membrane-enclosed lumen; GO:0031981//nuclear lumen; GO:0032991//macromolecular complex; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043228//non-membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0043232//intracellular non-membrane-bounded organelle; GO:0043233//organelle lumen; GO:0044422//organelle part; GO:0044424//intracellular part; GO:0044427//chromosomal part; GO:0044428//nuclear part; GO:0044430//cytoskeletal part; GO:0044444//cytoplasmic part; GO:0044446//intracellular organelle part; GO:0044454//nuclear chromosome part; GO:0044464//cell part; GO:0070013//intracellular organelle lumen; GO:0099080//supramolecular complex; GO:0099081//supramolecular polymer; GO:0099512//supramolecular fiber; GO:0099513//polymeric cytoskeletal fiber | GO:0000981//RNA polymerase II transcription factor activity, sequence-specific DNA binding; GO:0001067//regulatory region nucleic acid binding; GO:0001085//RNA polymerase II transcription factor binding; GO:0001102//RNA polymerase II activating transcription factor binding; GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003677//DNA binding; GO:0003700//transcription factor activity, sequence-specific DNA binding; GO:0003712//transcription cofactor activity; GO:0003714//transcription corepressor activity; GO:0005102//receptor binding; GO:0005488//binding; GO:0005515//protein binding; GO:0008134//transcription factor binding; GO:0016922//ligand-dependent nuclear receptor binding; GO:0019899//enzyme binding; GO:0033613//activating transcription factor binding; GO:0035257//nuclear hormone receptor binding; GO:0042826//histone deacetylase binding; GO:0044212//transcription regulatory region DNA binding; GO:0046966//thyroid hormone receptor binding; GO:0051427//hormone receptor binding; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding
KEGG
K04650 | NCOR1, N-CoR
NR
RWR76948.1 SANT/Myb domain-containing protein [Cinnamomum micranthum f. kanehirae]
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.