Feature identity
- Identifier
- PaHa11g00490.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,815 bp
- Genomic location
- 11:1,800,854–1,848,443
- Strand
- +
Hass · mRNA
PaHa11g00490.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,815
- bp
- 11:1,800,854–1,848,443
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa11g00490
- eggNOG
- Preferred name: TFB1-1 | Seed ortholog: 337451.A0A3S3P278 | COG: S | eggNOG OG: BSD@131567|A-1*, BSD@2759|C-2, PH_TFIIH@2759|A-1
- Gene Ontology
- GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity; GO:0001111 RNA polymerase II promoter clearance; GO:0001113 transcription open complex formation at RNA polymerase II promoter; GO:0003674 molecular_function; GO:0005634 nucleus; GO:0006281 DNA repair; GO:0006289 nucleotide-excision repair; GO:0006360 transcription by RNA polymerase I; GO:0006366 transcription by RNA polymerase II; GO:0006367 transcription initiation at RNA polymerase II promoter; GO:0009411 response to UV; GO:0009755 hormone-mediated signaling pathway; GO:0045893 positive regulation of DNA-templated transcription; GO:1990830 cellular response to leukemia inhibitory factor
- KEGG
- KO: K03141 | Pathway: 03022, 03420 | BRITE: 00001, 03021, 03400
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa11g00490.1-protein
derives_frommRNAPaHa11g00490.1
mRNAPaHa11g00490.1
part_ofgenePaHa11g00490
CDS
part_ofPaHa11g00490.1-CDS-11-1787993825:1800854..1800928mRNAPaHa11g00490.1
CDS
part_ofPaHa11g00490.1-CDS-11-1787993825:1802447..1802525mRNAPaHa11g00490.1
CDS
part_ofPaHa11g00490.1-CDS-11-1787993825:1803966..1804021mRNAPaHa11g00490.1
CDS
part_ofPaHa11g00490.1-CDS-11-1787993825:1804855..1804918mRNAPaHa11g00490.1
CDS
part_ofPaHa11g00490.1-CDS-11-1787993825:1806915..1807059mRNAPaHa11g00490.1
CDS
part_ofPaHa11g00490.1-CDS-11-1787993825:1814041..1814116mRNAPaHa11g00490.1
CDS
part_ofPaHa11g00490.1-CDS-11-1787993825:1814310..1814405mRNAPaHa11g00490.1
CDS
part_ofPaHa11g00490.1-CDS-11-1787993825:1815133..1815177mRNAPaHa11g00490.1
CDS
part_ofPaHa11g00490.1-CDS-11-1787993825:1816370..1816426mRNAPaHa11g00490.1
CDS
part_ofPaHa11g00490.1-CDS-11-1787993825:1816586..1816741mRNAPaHa11g00490.1
CDS
part_ofPaHa11g00490.1-CDS-11-1787993825:1817360..1817425mRNAPaHa11g00490.1
CDS
part_ofPaHa11g00490.1-CDS-11-1787993825:1826743..1826869mRNAPaHa11g00490.1
CDS
part_ofPaHa11g00490.1-CDS-11-1787993825:1827637..1827693mRNAPaHa11g00490.1
CDS
part_ofPaHa11g00490.1-CDS-11-1787993825:1827799..1827926mRNAPaHa11g00490.1
CDS
part_ofPaHa11g00490.1-CDS-11-1787993825:1828002..1828193mRNAPaHa11g00490.1
CDS
part_ofPaHa11g00490.1-CDS-11-1787993825:1830415..1830528mRNAPaHa11g00490.1
CDS
part_ofPaHa11g00490.1-CDS-11-1787993825:1831347..1831424mRNAPaHa11g00490.1
CDS
part_ofPaHa11g00490.1-CDS-11-1787993825:1838592..1838639mRNAPaHa11g00490.1
CDS
part_ofPaHa11g00490.1-CDS-11-1787993825:1841473..1841541mRNAPaHa11g00490.1
CDS
part_ofPaHa11g00490.1-CDS-11-1787993825:1848357..1848443mRNAPaHa11g00490.1
exon
part_ofPaHa11g00490.1-exon-11-1787993825:1800854..1800928mRNAPaHa11g00490.1
exon
part_ofPaHa11g00490.1-exon-11-1787993825:1802447..1802525mRNAPaHa11g00490.1
exon
part_ofPaHa11g00490.1-exon-11-1787993825:1803966..1804021mRNAPaHa11g00490.1
exon
part_ofPaHa11g00490.1-exon-11-1787993825:1804855..1804918mRNAPaHa11g00490.1
exon
part_ofPaHa11g00490.1-exon-11-1787993825:1806915..1807059mRNAPaHa11g00490.1
exon
part_ofPaHa11g00490.1-exon-11-1787993825:1814041..1814116mRNAPaHa11g00490.1
exon
part_ofPaHa11g00490.1-exon-11-1787993825:1814310..1814405mRNAPaHa11g00490.1
exon
part_ofPaHa11g00490.1-exon-11-1787993825:1815133..1815177mRNAPaHa11g00490.1
exon
part_ofPaHa11g00490.1-exon-11-1787993825:1816370..1816426mRNAPaHa11g00490.1
exon
part_ofPaHa11g00490.1-exon-11-1787993825:1816586..1816741mRNAPaHa11g00490.1
exon
part_ofPaHa11g00490.1-exon-11-1787993825:1817360..1817425mRNAPaHa11g00490.1
exon
part_ofPaHa11g00490.1-exon-11-1787993825:1826743..1826869mRNAPaHa11g00490.1
exon
part_ofPaHa11g00490.1-exon-11-1787993825:1827637..1827693mRNAPaHa11g00490.1
exon
part_ofPaHa11g00490.1-exon-11-1787993825:1827799..1827926mRNAPaHa11g00490.1
exon
part_ofPaHa11g00490.1-exon-11-1787993825:1828002..1828193mRNAPaHa11g00490.1
exon
part_ofPaHa11g00490.1-exon-11-1787993825:1830415..1830528mRNAPaHa11g00490.1
exon
part_ofPaHa11g00490.1-exon-11-1787993825:1831347..1831424mRNAPaHa11g00490.1
exon
part_ofPaHa11g00490.1-exon-11-1787993825:1838592..1838639mRNAPaHa11g00490.1
exon
part_ofPaHa11g00490.1-exon-11-1787993825:1841473..1841541mRNAPaHa11g00490.1
exon
part_ofPaHa11g00490.1-exon-11-1787993825:1848357..1848443mRNAPaHa11g00490.1
