Feature identity
- Identifier
- PaHa11g03900.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 636 bp
- Genomic location
- 11:8,851,147–8,858,473
- Strand
- +
Hass · mRNA
PaHa11g03900.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 636
- bp
- 11:8,851,147–8,858,473
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa11g03900
- eggNOG
- Preferred name: PI | Seed ortholog: 337451.A0A3S3PJG8 | COG: S | eggNOG OG: K-box@131567|A-1*, K-box@2759|B-2, K-box@3398|U-5, SRF-TF@131567|A-1*, SRF-TF@2759|C-2!, SRF-TF@3193|so-21, SRF-TF@3398|AqI-25, SRF-TF@35493|bP-19
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0010093 specification of floral organ identity; GO:0010095 specification of petal identity; GO:0010097 specification of stamen identity
- KEGG
- KO: K09264 | Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa11g03900.1-protein
derives_frommRNAPaHa11g03900.1
mRNAPaHa11g03900.1
part_ofgenePaHa11g03900
CDS
part_ofPaHa11g03900.1-CDS-11-1787993825:8851147..8851334mRNAPaHa11g03900.1
CDS
part_ofPaHa11g03900.1-CDS-11-1787993825:8851476..8851542mRNAPaHa11g03900.1
CDS
part_ofPaHa11g03900.1-CDS-11-1787993825:8852556..8852617mRNAPaHa11g03900.1
CDS
part_ofPaHa11g03900.1-CDS-11-1787993825:8856318..8856417mRNAPaHa11g03900.1
CDS
part_ofPaHa11g03900.1-CDS-11-1787993825:8856532..8856561mRNAPaHa11g03900.1
CDS
part_ofPaHa11g03900.1-CDS-11-1787993825:8856962..8857006mRNAPaHa11g03900.1
CDS
part_ofPaHa11g03900.1-CDS-11-1787993825:8858330..8858473mRNAPaHa11g03900.1
exon
part_ofPaHa11g03900.1-exon-11-1787993825:8851147..8851334mRNAPaHa11g03900.1
exon
part_ofPaHa11g03900.1-exon-11-1787993825:8851476..8851542mRNAPaHa11g03900.1
exon
part_ofPaHa11g03900.1-exon-11-1787993825:8852556..8852617mRNAPaHa11g03900.1
exon
part_ofPaHa11g03900.1-exon-11-1787993825:8856318..8856417mRNAPaHa11g03900.1
exon
part_ofPaHa11g03900.1-exon-11-1787993825:8856532..8856561mRNAPaHa11g03900.1
exon
part_ofPaHa11g03900.1-exon-11-1787993825:8856962..8857006mRNAPaHa11g03900.1
exon
part_ofPaHa11g03900.1-exon-11-1787993825:8858330..8858473mRNAPaHa11g03900.1
