Feature identity
- Identifier
- PaHa11g07970.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,187 bp
- Genomic location
- 11:27,572,367–27,602,615
- Strand
- +
Hass · mRNA
PaHa11g07970.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,187
- bp
- 11:27,572,367–27,602,615
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa11g07970
- eggNOG
- Preferred name: SE | Seed ortholog: 337451.A0A3S3QXF2 | COG: S | eggNOG OG: ARS2@2759|A-1, ARS2@3398|BB-10, SERRATE_Ars2_N@2759|A-1, SERRATE_Ars2_N@3398|Af-8
- Gene Ontology
- GO:0000381 regulation of alternative mRNA splicing, via spliceosome; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005730 nucleolus; GO:0005846 nuclear cap binding complex; GO:0006355 regulation of DNA-templated transcription; GO:0008380 RNA splicing; GO:0010267 ta-siRNA processing; GO:0010445 nuclear dicing body; GO:0016607 nuclear speck; GO:0031053 primary miRNA processing; GO:0048367 shoot system development; GO:0048509 regulation of meristem development; GO:2000011 regulation of adaxial/abaxial pattern formation
- KEGG
- KO: K27103 | BRITE: 00001, 03019
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa11g07970.1-protein
derives_frommRNAPaHa11g07970.1
mRNAPaHa11g07970.1
part_ofgenePaHa11g07970
CDS
part_ofPaHa11g07970.1-CDS-11-1787993825:27572367..27572734mRNAPaHa11g07970.1
CDS
part_ofPaHa11g07970.1-CDS-11-1787993825:27580547..27580659mRNAPaHa11g07970.1
CDS
part_ofPaHa11g07970.1-CDS-11-1787993825:27587381..27587441mRNAPaHa11g07970.1
CDS
part_ofPaHa11g07970.1-CDS-11-1787993825:27592920..27592994mRNAPaHa11g07970.1
CDS
part_ofPaHa11g07970.1-CDS-11-1787993825:27593143..27593217mRNAPaHa11g07970.1
CDS
part_ofPaHa11g07970.1-CDS-11-1787993825:27593301..27593348mRNAPaHa11g07970.1
CDS
part_ofPaHa11g07970.1-CDS-11-1787993825:27593557..27593625mRNAPaHa11g07970.1
CDS
part_ofPaHa11g07970.1-CDS-11-1787993825:27594001..27594774mRNAPaHa11g07970.1
CDS
part_ofPaHa11g07970.1-CDS-11-1787993825:27594876..27594924mRNAPaHa11g07970.1
CDS
part_ofPaHa11g07970.1-CDS-11-1787993825:27600063..27600361mRNAPaHa11g07970.1
CDS
part_ofPaHa11g07970.1-CDS-11-1787993825:27600461..27600655mRNAPaHa11g07970.1
CDS
part_ofPaHa11g07970.1-CDS-11-1787993825:27602555..27602615mRNAPaHa11g07970.1
exon
part_ofPaHa11g07970.1-exon-11-1787993825:27572367..27572734mRNAPaHa11g07970.1
exon
part_ofPaHa11g07970.1-exon-11-1787993825:27580547..27580659mRNAPaHa11g07970.1
exon
part_ofPaHa11g07970.1-exon-11-1787993825:27587381..27587441mRNAPaHa11g07970.1
exon
part_ofPaHa11g07970.1-exon-11-1787993825:27592920..27592994mRNAPaHa11g07970.1
exon
part_ofPaHa11g07970.1-exon-11-1787993825:27593143..27593217mRNAPaHa11g07970.1
exon
part_ofPaHa11g07970.1-exon-11-1787993825:27593301..27593348mRNAPaHa11g07970.1
exon
part_ofPaHa11g07970.1-exon-11-1787993825:27593557..27593625mRNAPaHa11g07970.1
exon
part_ofPaHa11g07970.1-exon-11-1787993825:27594001..27594774mRNAPaHa11g07970.1
exon
part_ofPaHa11g07970.1-exon-11-1787993825:27594876..27594924mRNAPaHa11g07970.1
exon
part_ofPaHa11g07970.1-exon-11-1787993825:27600063..27600361mRNAPaHa11g07970.1
exon
part_ofPaHa11g07970.1-exon-11-1787993825:27600461..27600655mRNAPaHa11g07970.1
exon
part_ofPaHa11g07970.1-exon-11-1787993825:27602555..27602615mRNAPaHa11g07970.1
