Feature identity
- Identifier
- PaHa11g10140.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 534 bp
- Genomic location
- 11:34,272,338–34,281,628
- Strand
- +
Hass · mRNA
PaHa11g10140.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 534
- bp
- 11:34,272,338–34,281,628
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa11g10140
- eggNOG
- Preferred name: LOC109017848 | Seed ortholog: 337451.A0A3S3N4N5 | COG: COG0557 | eggNOG OG: S1@131567|yl-44, SHS2_Rpb7-N@131567|C-2
- Gene Ontology
- GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; GO:0000956 nuclear-transcribed mRNA catabolic process; GO:0003697 single-stranded DNA binding; GO:0003727 single-stranded RNA binding; GO:0003899 DNA-directed RNA polymerase activity; GO:0003968 RNA-directed RNA polymerase activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005665 RNA polymerase II, core complex; GO:0006351 DNA-templated transcription; GO:0006352 DNA-templated transcription initiation; GO:0006366 transcription by RNA polymerase II; GO:0006367 transcription initiation at RNA polymerase II promoter; GO:0006368 transcription elongation by RNA polymerase II; GO:0009410 response to xenobiotic stimulus; GO:0031369 translation initiation factor binding; GO:0045948 positive regulation of translational initiation; GO:0060213 positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
- KEGG
- EC: ec:2.1.1.354 | KO: K03015 | Pathway: 03020, 03420 | BRITE: 00001, 01611, 03019, 03021, 03400
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa11g10140.1-protein
derives_frommRNAPaHa11g10140.1
mRNAPaHa11g10140.1
part_ofgenePaHa11g10140
CDS
part_ofPaHa11g10140.1-CDS-11-1787993825:34272338..34272453mRNAPaHa11g10140.1
CDS
part_ofPaHa11g10140.1-CDS-11-1787993825:34272534..34272699mRNAPaHa11g10140.1
CDS
part_ofPaHa11g10140.1-CDS-11-1787993825:34272798..34272848mRNAPaHa11g10140.1
CDS
part_ofPaHa11g10140.1-CDS-11-1787993825:34273149..34273214mRNAPaHa11g10140.1
CDS
part_ofPaHa11g10140.1-CDS-11-1787993825:34279763..34279831mRNAPaHa11g10140.1
CDS
part_ofPaHa11g10140.1-CDS-11-1787993825:34281563..34281628mRNAPaHa11g10140.1
exon
part_ofPaHa11g10140.1-exon-11-1787993825:34272338..34272453mRNAPaHa11g10140.1
exon
part_ofPaHa11g10140.1-exon-11-1787993825:34272534..34272699mRNAPaHa11g10140.1
exon
part_ofPaHa11g10140.1-exon-11-1787993825:34272798..34272848mRNAPaHa11g10140.1
exon
part_ofPaHa11g10140.1-exon-11-1787993825:34273149..34273214mRNAPaHa11g10140.1
exon
part_ofPaHa11g10140.1-exon-11-1787993825:34279763..34279831mRNAPaHa11g10140.1
exon
part_ofPaHa11g10140.1-exon-11-1787993825:34281563..34281628mRNAPaHa11g10140.1
