Anise · gene

Chr03.g28816

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,634
bp
Chr03:89,771,011–89,772,644
genomic location
Record overview

Feature identity

Identifier
Chr03.g28816
Feature type
gene
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
1,634 bp
Genomic location
Chr03:89,771,011–89,772,644
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
42345.XP_008793253.1,K,[zinc finger binding to DNA consensus sequence [AT]GATA[AG]]
Gene Ontology
zinc finger binding to DNA consensus sequence [AT]GATA[AG] | GO:0001101//response to acid chemical; GO:0001678//cellular glucose homeostasis; GO:0006139//nucleobase-containing compound metabolic process; GO:0006351//transcription, DNA-templated; GO:0006355//regulation of transcription, DNA-templated; GO:0006357//regulation of transcription from RNA polymerase II promoter; GO:0006366//transcription from RNA polymerase II promoter; GO:0006725//cellular aromatic compound metabolic process; GO:0006807//nitrogen compound metabolic process; GO:0006996//organelle organization; GO:0007154//cell communication; GO:0007165//signal transduction; GO:0007275//multicellular organism development; GO:0007568//aging; GO:0007623//circadian rhythm; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0009058//biosynthetic process; GO:0009059//macromolecule biosynthetic process; GO:0009314//response to radiation; GO:0009416//response to light stimulus; GO:0009628//response to abiotic stimulus; GO:0009639//response to red or far red light; GO:0009657//plastid organization; GO:0009658//chloroplast organization; GO:0009719//response to endogenous stimulus; GO:0009725//response to hormone; GO:0009735//response to cytokinin; GO:0009736//cytokinin-activated signaling pathway; GO:0009739//response to gibberellin; GO:0009740//gibberellic acid mediated signaling pathway; GO:0009743//response to carbohydrate; GO:0009746//response to hexose; GO:0009749//response to glucose; GO:0009755//hormone-mediated signaling pathway; GO:0009756//carbohydrate mediated signaling; GO:0009757//hexose mediated signaling; GO:0009889//regulation of biosynthetic process; GO:0009891//positive regulation of biosynthetic process; GO:0009893//positive regulation of metabolic process; GO:0009909//regulation of flower development; GO:0009910//negative regulation of flower development; GO:0009937//regulation of gibberellic acid mediated signaling pathway; GO:0009938//negative regulation of gibberellic acid mediated signaling pathway; GO:0009966//regulation of signal transduction; GO:0009968//negative regulation of signal transduction; GO:0009987//cellular process; GO:0010029//regulation of seed germination; GO:0010033//response to organic substance; GO:0010035//response to inorganic substance; GO:0010114//response to red light; GO:0010151//chloroplast elongation; GO:0010167//response to nitrate; GO:0010182//sugar mediated signaling pathway; GO:0010187//negative regulation of seed germination; GO:0010255//glucose mediated signaling pathway; GO:0010380//regulation of chlorophyll biosynthetic process; GO:0010467//gene expression; GO:0010468//regulation of gene expression; GO:0010476//gibberellin mediated signaling pathway; GO:0010556//regulation of macromolecule biosynthetic process; GO:0010557//positive regulation of macromolecule biosynthetic process; GO:0010604//positive regulation of macromolecule metabolic process; GO:0010628//positive regulation of gene expression; GO:0010646//regulation of cell communication; GO:0010648//negative regulation of cell communication; GO:0016043//cellular component organization; GO:0016070//RNA metabolic process; GO:0018130//heterocycle biosynthetic process; GO:0019219//regulation of nucleobase-containing compound metabolic process; GO:0019222//regulation of metabolic process; GO:0019438//aromatic compound biosynthetic process; GO:0019725//cellular homeostasis; GO:0023051//regulation of signaling; GO:0023052//signaling; GO:0023057//negative regulation of signaling; GO:0030154//cell differentiation; GO:0031323//regulation of cellular metabolic process; GO:0031325//positive regulation of cellular metabolic process; GO:0031326//regulation of cellular biosynthetic process; GO:0031328//positive regulation of cellular biosynthetic process; GO:0032501//multicellular organismal process; GO:0032502//developmental process; GO:0032774//RNA biosynthetic process; GO:0032870//cellular response to hormone stimulus; GO:0033500//carbohydrate homeostasis; GO:0033993//response to lipid; GO:0034284//response to monosaccharide; GO:0034641//cellular nitrogen compound metabolic process; GO:0034645//cellular macromolecule biosynthetic process; GO:0034654//nucleobase-containing compound biosynthetic process; GO:0042221//response to chemical; GO:0042592//homeostatic process; GO:0042593//glucose homeostasis; GO:0043170//macromolecule metabolic process; GO:0043610//regulation of carbohydrate utilization; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0044249//cellular biosynthetic process; GO:0044260//cellular macromolecule metabolic process; GO:0044271//cellular nitrogen compound biosynthetic process; GO:0045893//positive regulation of transcription, DNA-templated; GO:0045935//positive regulation of nucleobase-containing compound metabolic process; GO:0045944//positive regulation of transcription from RNA polymerase II promoter; GO:0046483//heterocycle metabolic process; GO:0048511//rhythmic process; GO:0048518//positive regulation of biological process; GO:0048519//negative regulation of biological process; GO:0048522//positive regulation of cellular process; GO:0048523//negative regulation of cellular process; GO:0048580//regulation of post-embryonic development; GO:0048581//negative regulation of post-embryonic development; GO:0048583//regulation of response to stimulus; GO:0048585//negative regulation of response to stimulus; GO:0048731//system development; GO:0048831//regulation of shoot system development; GO:0048856//anatomical structure development; GO:0048869//cellular developmental process; GO:0048878//chemical homeostasis; GO:0050789//regulation of biological process; GO:0050793//regulation of developmental process; GO:0050794//regulation of cellular process; GO:0050896//response to stimulus; GO:0051093//negative regulation of developmental process; GO:0051171//regulation of nitrogen compound metabolic process; GO:0051173//positive regulation of nitrogen compound metabolic process; GO:0051193//regulation of cofactor metabolic process; GO:0051194//positive regulation of cofactor metabolic process; GO:0051239//regulation of multicellular organismal process; GO:0051241//negative regulation of multicellular organismal process; GO:0051252//regulation of RNA metabolic process; GO:0051254//positive regulation of RNA metabolic process; GO:0051716//cellular response to stimulus; GO:0055082//cellular chemical homeostasis; GO:0060255//regulation of macromolecule metabolic process; GO:0065007//biological regulation; GO:0065008//regulation of biological quality; GO:0070887//cellular response to chemical stimulus; GO:0071229//cellular response to acid chemical; GO:0071310//cellular response to organic substance; GO:0071322//cellular response to carbohydrate stimulus; GO:0071326//cellular response to monosaccharide stimulus; GO:0071331//cellular response to hexose stimulus; GO:0071333//cellular response to glucose stimulus; GO:0071368//cellular response to cytokinin stimulus; GO:0071370//cellular response to gibberellin stimulus; GO:0071396//cellular response to lipid; GO:0071495//cellular response to endogenous stimulus; GO:0071704//organic substance metabolic process; GO:0071840//cellular component organization or biogenesis; GO:0080050//regulation of seed development; GO:0080090//regulation of primary metabolic process; GO:0090056//regulation of chlorophyll metabolic process; GO:0090304//nucleic acid metabolic process; GO:0090693//plant organ senescence; GO:0097659//nucleic acid-templated transcription; GO:0099402//plant organ development; GO:1900140//regulation of seedling development; GO:1901360//organic cyclic compound metabolic process; GO:1901362//organic cyclic compound biosynthetic process; GO:1901401//regulation of tetrapyrrole metabolic process; GO:1901403//positive regulation of tetrapyrrole metabolic process; GO:1901463//regulation of tetrapyrrole biosynthetic process; GO:1901465//positive regulation of tetrapyrrole biosynthetic process; GO:1901576//organic substance biosynthetic process; GO:1901698//response to nitrogen compound; GO:1901700//response to oxygen-containing compound; GO:1901701//cellular response to oxygen-containing compound; GO:1902326//positive regulation of chlorophyll biosynthetic process; GO:1902680//positive regulation of RNA biosynthetic process; GO:1903506//regulation of nucleic acid-templated transcription; GO:1903508//positive regulation of nucleic acid-templated transcription; GO:2000026//regulation of multicellular organismal development; GO:2000028//regulation of photoperiodism, flowering; GO:2000112//regulation of cellular macromolecule biosynthetic process; GO:2000241//regulation of reproductive process; GO:2000242//negative regulation of reproductive process; GO:2001141//regulation of RNA biosynthetic process | GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0005667//transcription factor complex; GO:0032991//macromolecular complex; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0044424//intracellular part; GO:0044464//cell part | GO:0000976//transcription regulatory region sequence-specific DNA binding; GO:0000977//RNA polymerase II regulatory region sequence-specific DNA binding; GO:0000981//RNA polymerase II transcription factor activity, sequence-specific DNA binding; GO:0001012//RNA polymerase II regulatory region DNA binding; GO:0001067//regulatory region nucleic acid binding; GO:0001085//RNA polymerase II transcription factor binding; GO:0001228//transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding; GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003677//DNA binding; GO:0003682//chromatin binding; GO:0003690//double-stranded DNA binding; GO:0003700//transcription factor activity, sequence-specific DNA binding; GO:0005488//binding; GO:0005515//protein binding; GO:0008134//transcription factor binding; GO:0043565//sequence-specific DNA binding; GO:0044212//transcription regulatory region DNA binding; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding; GO:1990837//sequence-specific double-stranded DNA binding
NR
RWR78061.1 putative GATA transcription factor 22 [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
Q9SZI6.1 RecName: Full=Putative GATA transcription factor 22; AltName: Full=Protein CYTOKININ-RESPONSIVE GATA FACTOR 1; AltName: Full=Protein GNC-LIKE; Short=AtGNL [Arabidopsis thaliana]
Biological context

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