Feature identity
- Identifier
- PaHa11g18260.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 630 bp
- Genomic location
- 11:48,963,659–48,967,439
- Strand
- +
Hass · mRNA
PaHa11g18260.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 630
- bp
- 11:48,963,659–48,967,439
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa11g18260
- eggNOG
- Preferred name: MADS2 | Seed ortholog: 337451.A0A3S3QYS6 | COG: S | eggNOG OG: K-box@131567|A-1*, K-box@2759|B-2, K-box@3398|U-5, SRF-TF@131567|A-1*, SRF-TF@2759|C-2!, SRF-TF@3193|so-21, SRF-TF@3398|AqI-25, SRF-TF@35493|bP-19
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0010093 specification of floral organ identity; GO:0010097 specification of stamen identity
- KEGG
- KO: K09264 | Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa11g18260.1-protein
derives_frommRNAPaHa11g18260.1
mRNAPaHa11g18260.1
part_ofgenePaHa11g18260
CDS
part_ofPaHa11g18260.1-CDS-11-1787993825:48963659..48963846mRNAPaHa11g18260.1
CDS
part_ofPaHa11g18260.1-CDS-11-1787993825:48963966..48964032mRNAPaHa11g18260.1
CDS
part_ofPaHa11g18260.1-CDS-11-1787993825:48964112..48964173mRNAPaHa11g18260.1
CDS
part_ofPaHa11g18260.1-CDS-11-1787993825:48966070..48966169mRNAPaHa11g18260.1
CDS
part_ofPaHa11g18260.1-CDS-11-1787993825:48966406..48966435mRNAPaHa11g18260.1
CDS
part_ofPaHa11g18260.1-CDS-11-1787993825:48966789..48966833mRNAPaHa11g18260.1
CDS
part_ofPaHa11g18260.1-CDS-11-1787993825:48967302..48967439mRNAPaHa11g18260.1
exon
part_ofPaHa11g18260.1-exon-11-1787993825:48963659..48963846mRNAPaHa11g18260.1
exon
part_ofPaHa11g18260.1-exon-11-1787993825:48963966..48964032mRNAPaHa11g18260.1
exon
part_ofPaHa11g18260.1-exon-11-1787993825:48964112..48964173mRNAPaHa11g18260.1
exon
part_ofPaHa11g18260.1-exon-11-1787993825:48966070..48966169mRNAPaHa11g18260.1
exon
part_ofPaHa11g18260.1-exon-11-1787993825:48966406..48966435mRNAPaHa11g18260.1
exon
part_ofPaHa11g18260.1-exon-11-1787993825:48966789..48966833mRNAPaHa11g18260.1
exon
part_ofPaHa11g18260.1-exon-11-1787993825:48967302..48967439mRNAPaHa11g18260.1
