Feature identity
- Identifier
- PaHa11g18580.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,337 bp
- Genomic location
- 11:49,486,917–49,499,238
- Strand
- −
Hass · mRNA
PaHa11g18580.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,337
- bp
- 11:49,486,917–49,499,238
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa11g18580
- eggNOG
- Preferred name: LOC109011131 | Seed ortholog: 337451.A0A3S3PKP5 | COG: S | eggNOG OG: Anticodon_3@131567|A-1, Anticodon_3@3398|CEH-35, tRNA-synt_1g@131567|AT-7, tRNA-synt_1g@1437183|ERB-36, tRNA_bind@131567|h-6
- Gene Ontology
- GO:0002181 cytoplasmic translation; GO:0004825 methionine-tRNA ligase activity; GO:0005515 protein binding; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006418 tRNA aminoacylation for protein translation; GO:0006424 glutamyl-tRNA aminoacylation; GO:0006431 methionyl-tRNA aminoacylation; GO:0008270 zinc ion binding; GO:0009303 rRNA transcription; GO:0036120 cellular response to platelet-derived growth factor stimulus; GO:0050667 homocysteine metabolic process; GO:0071364 cellular response to epidermal growth factor stimulus; GO:1901838 positive regulation of transcription of nucleolar large rRNA by RNA polymerase I; GO:1990825 sequence-specific mRNA binding
- KEGG
- EC: ec:6.1.1.10 | KO: K01874 | Pathway: 00450, 00970, 01100 | BRITE: 00001, 01000, 01007, 01613, 03016
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa11g18580.1-protein
derives_frommRNAPaHa11g18580.1
mRNAPaHa11g18580.1
part_ofgenePaHa11g18580
CDS
part_ofPaHa11g18580.1-CDS-11-1787993825:49486917..49487084mRNAPaHa11g18580.1
CDS
part_ofPaHa11g18580.1-CDS-11-1787993825:49490995..49491096mRNAPaHa11g18580.1
CDS
part_ofPaHa11g18580.1-CDS-11-1787993825:49491185..49491417mRNAPaHa11g18580.1
CDS
part_ofPaHa11g18580.1-CDS-11-1787993825:49492701..49492821mRNAPaHa11g18580.1
CDS
part_ofPaHa11g18580.1-CDS-11-1787993825:49493568..49493708mRNAPaHa11g18580.1
CDS
part_ofPaHa11g18580.1-CDS-11-1787993825:49493867..49493995mRNAPaHa11g18580.1
CDS
part_ofPaHa11g18580.1-CDS-11-1787993825:49494096..49494161mRNAPaHa11g18580.1
CDS
part_ofPaHa11g18580.1-CDS-11-1787993825:49494318..49494436mRNAPaHa11g18580.1
CDS
part_ofPaHa11g18580.1-CDS-11-1787993825:49495139..49495253mRNAPaHa11g18580.1
CDS
part_ofPaHa11g18580.1-CDS-11-1787993825:49495348..49495454mRNAPaHa11g18580.1
CDS
part_ofPaHa11g18580.1-CDS-11-1787993825:49496190..49496280mRNAPaHa11g18580.1
CDS
part_ofPaHa11g18580.1-CDS-11-1787993825:49496449..49496592mRNAPaHa11g18580.1
CDS
part_ofPaHa11g18580.1-CDS-11-1787993825:49496790..49497020mRNAPaHa11g18580.1
CDS
part_ofPaHa11g18580.1-CDS-11-1787993825:49497118..49497273mRNAPaHa11g18580.1
CDS
part_ofPaHa11g18580.1-CDS-11-1787993825:49497982..49498135mRNAPaHa11g18580.1
CDS
part_ofPaHa11g18580.1-CDS-11-1787993825:49498884..49499028mRNAPaHa11g18580.1
CDS
part_ofPaHa11g18580.1-CDS-11-1787993825:49499124..49499238mRNAPaHa11g18580.1
exon
part_ofPaHa11g18580.1-exon-11-1787993825:49486917..49487084mRNAPaHa11g18580.1
exon
part_ofPaHa11g18580.1-exon-11-1787993825:49490995..49491096mRNAPaHa11g18580.1
exon
part_ofPaHa11g18580.1-exon-11-1787993825:49491185..49491417mRNAPaHa11g18580.1
exon
part_ofPaHa11g18580.1-exon-11-1787993825:49492701..49492821mRNAPaHa11g18580.1
exon
part_ofPaHa11g18580.1-exon-11-1787993825:49493568..49493708mRNAPaHa11g18580.1
exon
part_ofPaHa11g18580.1-exon-11-1787993825:49493867..49493995mRNAPaHa11g18580.1
exon
part_ofPaHa11g18580.1-exon-11-1787993825:49494096..49494161mRNAPaHa11g18580.1
exon
part_ofPaHa11g18580.1-exon-11-1787993825:49494318..49494436mRNAPaHa11g18580.1
exon
part_ofPaHa11g18580.1-exon-11-1787993825:49495139..49495253mRNAPaHa11g18580.1
exon
part_ofPaHa11g18580.1-exon-11-1787993825:49495348..49495454mRNAPaHa11g18580.1
exon
part_ofPaHa11g18580.1-exon-11-1787993825:49496190..49496280mRNAPaHa11g18580.1
exon
part_ofPaHa11g18580.1-exon-11-1787993825:49496449..49496592mRNAPaHa11g18580.1
exon
part_ofPaHa11g18580.1-exon-11-1787993825:49496790..49497020mRNAPaHa11g18580.1
exon
part_ofPaHa11g18580.1-exon-11-1787993825:49497118..49497273mRNAPaHa11g18580.1
exon
part_ofPaHa11g18580.1-exon-11-1787993825:49497982..49498135mRNAPaHa11g18580.1
exon
part_ofPaHa11g18580.1-exon-11-1787993825:49498884..49499028mRNAPaHa11g18580.1
exon
part_ofPaHa11g18580.1-exon-11-1787993825:49499124..49499238mRNAPaHa11g18580.1
