Feature identity
- Identifier
- PaHa11g19830.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,830 bp
- Genomic location
- 11:51,069,870–51,074,970
- Strand
- +
Hass · mRNA
PaHa11g19830.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,830
- bp
- 11:51,069,870–51,074,970
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa11g19830
- eggNOG
- Preferred name: LOC104606980 | Seed ortholog: 337451.A0A3S3R1C8 | COG: S | eggNOG OG: zf-C2H2@131567|qO-18, zf-C2H2@2759|AFG-19, zf-C2H2@3193|IJs-30, zf-C2H2@58023|JjW-31
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0008356 asymmetric cell division; GO:0043565 sequence-specific DNA binding; GO:0045893 positive regulation of DNA-templated transcription; GO:0048364 root development
- KEGG
- KO: K25870 | Pathway: 04391, 05168 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa11g19830.1-protein
derives_frommRNAPaHa11g19830.1
mRNAPaHa11g19830.1
part_ofgenePaHa11g19830
CDS
part_ofPaHa11g19830.1-CDS-11-1787993825:51069870..51070020mRNAPaHa11g19830.1
CDS
part_ofPaHa11g19830.1-CDS-11-1787993825:51070211..51070607mRNAPaHa11g19830.1
CDS
part_ofPaHa11g19830.1-CDS-11-1787993825:51072340..51073471mRNAPaHa11g19830.1
CDS
part_ofPaHa11g19830.1-CDS-11-1787993825:51073522..51073636mRNAPaHa11g19830.1
CDS
part_ofPaHa11g19830.1-CDS-11-1787993825:51074936..51074970mRNAPaHa11g19830.1
exon
part_ofPaHa11g19830.1-exon-11-1787993825:51069870..51070020mRNAPaHa11g19830.1
exon
part_ofPaHa11g19830.1-exon-11-1787993825:51070211..51070607mRNAPaHa11g19830.1
exon
part_ofPaHa11g19830.1-exon-11-1787993825:51072340..51073471mRNAPaHa11g19830.1
exon
part_ofPaHa11g19830.1-exon-11-1787993825:51073522..51073636mRNAPaHa11g19830.1
exon
part_ofPaHa11g19830.1-exon-11-1787993825:51074936..51074970mRNAPaHa11g19830.1
