Anise · gene

Chr09.g65928

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

25,221
bp
Chr09:23,587,724–23,612,944
genomic location
Record overview

Feature identity

Identifier
Chr09.g65928
Feature type
gene
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
25,221 bp
Genomic location
Chr09:23,587,724–23,612,944
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
4432.XP_010265578.1,A,[Pre-rRNA-processing protein]
Gene Ontology
Pre-rRNA-processing protein | GO:0000028//ribosomal small subunit assembly; GO:0000447//endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000460//maturation of 5.8S rRNA; GO:0000462//maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000466//maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000469//cleavage involved in rRNA processing; GO:0000472//endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000478//endonucleolytic cleavage involved in rRNA processing; GO:0000479//endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000480//endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000966//RNA 5'-end processing; GO:0000967//rRNA 5'-end processing; GO:0006139//nucleobase-containing compound metabolic process; GO:0006364//rRNA processing; GO:0006396//RNA processing; GO:0006725//cellular aromatic compound metabolic process; GO:0006807//nitrogen compound metabolic process; GO:0006996//organelle organization; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0009987//cellular process; GO:0010467//gene expression; GO:0016043//cellular component organization; GO:0016070//RNA metabolic process; GO:0016072//rRNA metabolic process; GO:0022607//cellular component assembly; GO:0022613//ribonucleoprotein complex biogenesis; GO:0022618//ribonucleoprotein complex assembly; GO:0030490//maturation of SSU-rRNA; GO:0034462//small-subunit processome assembly; GO:0034470//ncRNA processing; GO:0034471//ncRNA 5'-end processing; GO:0034622//cellular macromolecular complex assembly; GO:0034641//cellular nitrogen compound metabolic process; GO:0034660//ncRNA metabolic process; GO:0042254//ribosome biogenesis; GO:0042255//ribosome assembly; GO:0042274//ribosomal small subunit biogenesis; GO:0043170//macromolecule metabolic process; GO:0043933//macromolecular complex subunit organization; GO:0044085//cellular component biogenesis; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0046483//heterocycle metabolic process; GO:0065003//macromolecular complex assembly; GO:0070925//organelle assembly; GO:0071704//organic substance metabolic process; GO:0071826//ribonucleoprotein complex subunit organization; GO:0071840//cellular component organization or biogenesis; GO:0090304//nucleic acid metabolic process; GO:0090305//nucleic acid phosphodiester bond hydrolysis; GO:0090501//RNA phosphodiester bond hydrolysis; GO:0090502//RNA phosphodiester bond hydrolysis, endonucleolytic; GO:1901360//organic cyclic compound metabolic process | - | GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003723//RNA binding; GO:0005488//binding; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding
KEGG
K14785 | ESF2, ABT1
NR
KAA8544293.1 hypothetical protein F0562_022305 [Nyssa sinensis]
Swiss-Prot
Q59YL9.2 RecName: Full=Pre-rRNA-processing protein ESF2; AltName: Full=18S rRNA factor 2 [Candida albicans SC5314]
Biological context

Connected feature records

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